Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZC2HC1B (zinc finger C2HC-type containing 1B)

Identity

Alias_namesFAM164B
C6orf94
family with sequence similarity 164, member B
chromosome 6 open reading frame 94
Alias_symbol (synonym)dJ468K18.5
Other alias
HGNC (Hugo) ZC2HC1B
LocusID (NCBI) 153918
Atlas_Id 54791
Location 6q24.2  [Link to chromosome band 6q24]
Location_base_pair Starts at 143864436 and ends at 143938346 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PHACTR2 (6q24.2) / ZC2HC1B (6q24.2)ZNF496 (1q44) / ZC2HC1B (6q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(1;6)(q44;q24) ZNF496/ZC2HC1B


External links

Nomenclature
HGNC (Hugo)ZC2HC1B   21174
Cards
Entrez_Gene (NCBI)ZC2HC1B  153918  zinc finger C2HC-type containing 1B
AliasesC6orf94; FAM164B; dJ468K18.5
GeneCards (Weizmann)ZC2HC1B
Ensembl hg19 (Hinxton)ENSG00000118491 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118491 [Gene_View]  ENSG00000118491 [Sequence]  chr6:143864436-143938346 [Contig_View]  ZC2HC1B [Vega]
ICGC DataPortalENSG00000118491
TCGA cBioPortalZC2HC1B
AceView (NCBI)ZC2HC1B
Genatlas (Paris)ZC2HC1B
WikiGenes153918
SOURCE (Princeton)ZC2HC1B
Genetics Home Reference (NIH)ZC2HC1B
Genomic and cartography
GoldenPath hg38 (UCSC)ZC2HC1B  -     chr6:143864436-143938346 +  6q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZC2HC1B  -     6q24.2   [Description]    (hg19-Feb_2009)
EnsemblZC2HC1B - 6q24.2 [CytoView hg19]  ZC2HC1B - 6q24.2 [CytoView hg38]
Mapping of homologs : NCBIZC2HC1B [Mapview hg19]  ZC2HC1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC146950 BC146969 BC171862 DB515645
RefSeq transcript (Entrez)NM_001013623
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZC2HC1B
Cluster EST : UnigeneHs.121188 [ NCBI ]
CGAP (NCI)Hs.121188
Alternative Splicing GalleryENSG00000118491
Gene ExpressionZC2HC1B [ NCBI-GEO ]   ZC2HC1B [ EBI - ARRAY_EXPRESS ]   ZC2HC1B [ SEEK ]   ZC2HC1B [ MEM ]
Gene Expression Viewer (FireBrowse)ZC2HC1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153918
GTEX Portal (Tissue expression)ZC2HC1B
Human Protein AtlasENSG00000118491-ZC2HC1B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TFG8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TFG8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TFG8
Splice isoforms : SwissVarQ5TFG8
PhosPhoSitePlusQ5TFG8
Domains : Interpro (EBI)ZC2HC1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZC2HC1B
DMDM Disease mutations153918
Blocks (Seattle)ZC2HC1B
SuperfamilyQ5TFG8
Human Protein Atlas [tissue]ENSG00000118491-ZC2HC1B [tissue]
Peptide AtlasQ5TFG8
HPRD10178
IPIIPI00789809   IPI00076952   
Protein Interaction databases
DIP (DOE-UCLA)Q5TFG8
IntAct (EBI)Q5TFG8
FunCoupENSG00000118491
BioGRIDZC2HC1B
STRING (EMBL)ZC2HC1B
ZODIACZC2HC1B
Ontologies - Pathways
QuickGOQ5TFG8
Ontology : AmiGOmetal ion binding  
Ontology : EGO-EBImetal ion binding  
NDEx NetworkZC2HC1B
Atlas of Cancer Signalling NetworkZC2HC1B
Wikipedia pathwaysZC2HC1B
Orthology - Evolution
OrthoDB153918
GeneTree (enSembl)ENSG00000118491
Phylogenetic Trees/Animal Genes : TreeFamZC2HC1B
HOVERGENQ5TFG8
HOGENOMQ5TFG8
Homologs : HomoloGeneZC2HC1B
Homology/Alignments : Family Browser (UCSC)ZC2HC1B
Gene fusions - Rearrangements
Fusion : MitelmanZNF496/ZC2HC1B [1q44/6q24.2]  [t(1;6)(q44;q24)]  
Fusion : QuiverZC2HC1B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZC2HC1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZC2HC1B
dbVarZC2HC1B
ClinVarZC2HC1B
1000_GenomesZC2HC1B 
Exome Variant ServerZC2HC1B
ExAC (Exome Aggregation Consortium)ENSG00000118491
GNOMAD BrowserENSG00000118491
Varsome BrowserZC2HC1B
Genetic variants : HAPMAP153918
Genomic Variants (DGV)ZC2HC1B [DGVbeta]
DECIPHERZC2HC1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZC2HC1B 
Mutations
ICGC Data PortalZC2HC1B 
TCGA Data PortalZC2HC1B 
Broad Tumor PortalZC2HC1B
OASIS PortalZC2HC1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZC2HC1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZC2HC1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZC2HC1B
DgiDB (Drug Gene Interaction Database)ZC2HC1B
DoCM (Curated mutations)ZC2HC1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZC2HC1B (select a term)
intoGenZC2HC1B
Cancer3DZC2HC1B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZC2HC1B
MedgenZC2HC1B
Genetic Testing Registry ZC2HC1B
NextProtQ5TFG8 [Medical]
TSGene153918
GENETestsZC2HC1B
Target ValidationZC2HC1B
Huge Navigator ZC2HC1B [HugePedia]
snp3D : Map Gene to Disease153918
BioCentury BCIQZC2HC1B
ClinGenZC2HC1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD153918
Chemical/Pharm GKB GenePA165617689
Clinical trialZC2HC1B
Miscellaneous
canSAR (ICR)ZC2HC1B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZC2HC1B
EVEXZC2HC1B
GoPubMedZC2HC1B
iHOPZC2HC1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:50:47 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.