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ZC3H10 (zinc finger CCCH-type containing 10)

Identity

Alias_namesZC3HDC10
zinc finger CCCH-type domain containing 10
Alias_symbol (synonym)FLJ14451
Other alias
HGNC (Hugo) ZC3H10
LocusID (NCBI) 84872
Atlas_Id 50523
Location 12q13.2  [Link to chromosome band 12q13]
Location_base_pair Starts at 56118220 and ends at 56122496 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZC3H10   25893
Cards
Entrez_Gene (NCBI)ZC3H10  84872  zinc finger CCCH-type containing 10
AliasesZC3HDC10
GeneCards (Weizmann)ZC3H10
Ensembl hg19 (Hinxton)ENSG00000135482 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135482 [Gene_View]  chr12:56118220-56122496 [Contig_View]  ZC3H10 [Vega]
ICGC DataPortalENSG00000135482
TCGA cBioPortalZC3H10
AceView (NCBI)ZC3H10
Genatlas (Paris)ZC3H10
WikiGenes84872
SOURCE (Princeton)ZC3H10
Genetics Home Reference (NIH)ZC3H10
Genomic and cartography
GoldenPath hg38 (UCSC)ZC3H10  -     chr12:56118220-56122496 +  12q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZC3H10  -     12q13.2   [Description]    (hg19-Feb_2009)
EnsemblZC3H10 - 12q13.2 [CytoView hg19]  ZC3H10 - 12q13.2 [CytoView hg38]
Mapping of homologs : NCBIZC3H10 [Mapview hg19]  ZC3H10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027357 BC018708 DA050357 DA534848 EU832628
RefSeq transcript (Entrez)NM_001303124 NM_001303125 NM_032786
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZC3H10
Cluster EST : UnigeneHs.632706 [ NCBI ]
CGAP (NCI)Hs.632706
Alternative Splicing GalleryENSG00000135482
Gene ExpressionZC3H10 [ NCBI-GEO ]   ZC3H10 [ EBI - ARRAY_EXPRESS ]   ZC3H10 [ SEEK ]   ZC3H10 [ MEM ]
Gene Expression Viewer (FireBrowse)ZC3H10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84872
GTEX Portal (Tissue expression)ZC3H10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96K80   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96K80  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96K80
Splice isoforms : SwissVarQ96K80
PhosPhoSitePlusQ96K80
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Znf_CCCH   
Domain families : Pfam (Sanger)zf-CCCH (PF00642)   
Domain families : Pfam (NCBI)pfam00642   
Domain families : Smart (EMBL)ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)ZC3H10
DMDM Disease mutations84872
Blocks (Seattle)ZC3H10
SuperfamilyQ96K80
Human Protein AtlasENSG00000135482
Peptide AtlasQ96K80
HPRD07860
IPIIPI00064474   IPI01020696   IPI01021694   IPI01021834   
Protein Interaction databases
DIP (DOE-UCLA)Q96K80
IntAct (EBI)Q96K80
FunCoupENSG00000135482
BioGRIDZC3H10
STRING (EMBL)ZC3H10
ZODIACZC3H10
Ontologies - Pathways
QuickGOQ96K80
Ontology : AmiGORNA binding  protein binding  metal ion binding  
Ontology : EGO-EBIRNA binding  protein binding  metal ion binding  
NDEx NetworkZC3H10
Atlas of Cancer Signalling NetworkZC3H10
Wikipedia pathwaysZC3H10
Orthology - Evolution
OrthoDB84872
GeneTree (enSembl)ENSG00000135482
Phylogenetic Trees/Animal Genes : TreeFamZC3H10
HOVERGENQ96K80
HOGENOMQ96K80
Homologs : HomoloGeneZC3H10
Homology/Alignments : Family Browser (UCSC)ZC3H10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZC3H10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZC3H10
dbVarZC3H10
ClinVarZC3H10
1000_GenomesZC3H10 
Exome Variant ServerZC3H10
ExAC (Exome Aggregation Consortium)ZC3H10 (select the gene name)
Genetic variants : HAPMAP84872
Genomic Variants (DGV)ZC3H10 [DGVbeta]
DECIPHERZC3H10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZC3H10 
Mutations
ICGC Data PortalZC3H10 
TCGA Data PortalZC3H10 
Broad Tumor PortalZC3H10
OASIS PortalZC3H10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZC3H10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZC3H10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZC3H10
DgiDB (Drug Gene Interaction Database)ZC3H10
DoCM (Curated mutations)ZC3H10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZC3H10 (select a term)
intoGenZC3H10
Cancer3DZC3H10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZC3H10
Genetic Testing Registry ZC3H10
NextProtQ96K80 [Medical]
TSGene84872
GENETestsZC3H10
Huge Navigator ZC3H10 [HugePedia]
snp3D : Map Gene to Disease84872
BioCentury BCIQZC3H10
ClinGenZC3H10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84872
Chemical/Pharm GKB GenePA142670534
Clinical trialZC3H10
Miscellaneous
canSAR (ICR)ZC3H10 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZC3H10
EVEXZC3H10
GoPubMedZC3H10
iHOPZC3H10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:44:35 CEST 2017

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