Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZC3H11A (zinc finger CCCH-type containing 11A)

Identity

Alias_namesZC3HDC11A
zinc finger CCCH-type domain containing 11A
Alias_symbol (synonym)KIAA0663
Other alias
HGNC (Hugo) ZC3H11A
LocusID (NCBI) 9877
Atlas_Id 75877
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 203795537 and ends at 203854128 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAAP20 (1p36.33) / ZC3H11A (1q32.1)ZC3H11A (1q32.1) / LYRM2 (6q15)ZC3H11A (1q32.1) / NCL (2q37.1)
ZC3H11A (1q32.1) / SEC61A1 (3q21.3)ZC3H11A (1q32.1) / TMCC2 (1q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZC3H11A   29093
Cards
Entrez_Gene (NCBI)ZC3H11A  9877  zinc finger CCCH-type containing 11A
AliasesZC3HDC11A
GeneCards (Weizmann)ZC3H11A
Ensembl hg19 (Hinxton)ENSG00000058673 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000058673 [Gene_View]  chr1:203795537-203854128 [Contig_View]  ZC3H11A [Vega]
ICGC DataPortalENSG00000058673
TCGA cBioPortalZC3H11A
AceView (NCBI)ZC3H11A
Genatlas (Paris)ZC3H11A
WikiGenes9877
SOURCE (Princeton)ZC3H11A
Genetics Home Reference (NIH)ZC3H11A
Genomic and cartography
GoldenPath hg38 (UCSC)ZC3H11A  -     chr1:203795537-203854128 +  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZC3H11A  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblZC3H11A - 1q32.1 [CytoView hg19]  ZC3H11A - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBIZC3H11A [Mapview hg19]  ZC3H11A [Mapview hg38]
OMIM613513   
Gene and transcription
Genbank (Entrez)AB014563 AI917926 AK095858 AK296983 AK310470
RefSeq transcript (Entrez)NM_001319238 NM_001319239 NM_001350261 NM_001350262 NM_001350263 NM_001350264 NM_001350265 NM_001350266 NM_014827
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZC3H11A
Cluster EST : UnigeneHs.732801 [ NCBI ]
CGAP (NCI)Hs.732801
Alternative Splicing GalleryENSG00000058673
Gene ExpressionZC3H11A [ NCBI-GEO ]   ZC3H11A [ EBI - ARRAY_EXPRESS ]   ZC3H11A [ SEEK ]   ZC3H11A [ MEM ]
Gene Expression Viewer (FireBrowse)ZC3H11A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9877
GTEX Portal (Tissue expression)ZC3H11A
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75152   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75152  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75152
Splice isoforms : SwissVarO75152
PhosPhoSitePlusO75152
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Znf_CCCH   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)ZC3H11A
DMDM Disease mutations9877
Blocks (Seattle)ZC3H11A
SuperfamilyO75152
Human Protein AtlasENSG00000058673
Peptide AtlasO75152
HPRD11100
IPIIPI00328306   IPI01013941   IPI00953423   IPI01014067   IPI00455725   
Protein Interaction databases
DIP (DOE-UCLA)O75152
IntAct (EBI)O75152
FunCoupENSG00000058673
BioGRIDZC3H11A
STRING (EMBL)ZC3H11A
ZODIACZC3H11A
Ontologies - Pathways
QuickGOO75152
Ontology : AmiGOtranscription export complex  RNA binding  protein binding  nucleoplasm  termination of RNA polymerase II transcription  RNA export from nucleus  mRNA export from nucleus  poly(A)+ mRNA export from nucleus  mRNA 3'-end processing  metal ion binding  
Ontology : EGO-EBItranscription export complex  RNA binding  protein binding  nucleoplasm  termination of RNA polymerase II transcription  RNA export from nucleus  mRNA export from nucleus  poly(A)+ mRNA export from nucleus  mRNA 3'-end processing  metal ion binding  
NDEx NetworkZC3H11A
Atlas of Cancer Signalling NetworkZC3H11A
Wikipedia pathwaysZC3H11A
Orthology - Evolution
OrthoDB9877
GeneTree (enSembl)ENSG00000058673
Phylogenetic Trees/Animal Genes : TreeFamZC3H11A
HOVERGENO75152
HOGENOMO75152
Homologs : HomoloGeneZC3H11A
Homology/Alignments : Family Browser (UCSC)ZC3H11A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZC3H11A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZC3H11A
dbVarZC3H11A
ClinVarZC3H11A
1000_GenomesZC3H11A 
Exome Variant ServerZC3H11A
ExAC (Exome Aggregation Consortium)ZC3H11A (select the gene name)
Genetic variants : HAPMAP9877
Genomic Variants (DGV)ZC3H11A [DGVbeta]
DECIPHERZC3H11A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZC3H11A 
Mutations
ICGC Data PortalZC3H11A 
TCGA Data PortalZC3H11A 
Broad Tumor PortalZC3H11A
OASIS PortalZC3H11A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZC3H11A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZC3H11A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZC3H11A
DgiDB (Drug Gene Interaction Database)ZC3H11A
DoCM (Curated mutations)ZC3H11A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZC3H11A (select a term)
intoGenZC3H11A
Cancer3DZC3H11A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613513   
Orphanet
MedgenZC3H11A
Genetic Testing Registry ZC3H11A
NextProtO75152 [Medical]
TSGene9877
GENETestsZC3H11A
Target ValidationZC3H11A
Huge Navigator ZC3H11A [HugePedia]
snp3D : Map Gene to Disease9877
BioCentury BCIQZC3H11A
ClinGenZC3H11A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9877
Chemical/Pharm GKB GenePA142670535
Clinical trialZC3H11A
Miscellaneous
canSAR (ICR)ZC3H11A (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZC3H11A
EVEXZC3H11A
GoPubMedZC3H11A
iHOPZC3H11A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:09 CEST 2017

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