Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZC3H12B (zinc finger CCCH-type containing 12B)

Identity

Alias (NCBI)CXorf32
MCPIP2
HGNC (Hugo) ZC3H12B
HGNC Alias symbMCPIP2
HGNC Alias nameMCP induced protein 2
HGNC Previous nameCXorf32
HGNC Previous namechromosome X open reading frame 32
LocusID (NCBI) 340554
Atlas_Id 75878
Location Xq12  [Link to chromosome band Xq12]
Location_base_pair Starts at 65488735 and ends at 65507887 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZC3H12B   17407
Cards
Entrez_Gene (NCBI)ZC3H12B    zinc finger CCCH-type containing 12B
AliasesCXorf32; MCPIP2
GeneCards (Weizmann)ZC3H12B
Ensembl hg19 (Hinxton)ENSG00000102053 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102053 [Gene_View]  ENSG00000102053 [Sequence]  chrX:65488735-65507887 [Contig_View]  ZC3H12B [Vega]
ICGC DataPortalENSG00000102053
TCGA cBioPortalZC3H12B
AceView (NCBI)ZC3H12B
Genatlas (Paris)ZC3H12B
SOURCE (Princeton)ZC3H12B
Genetics Home Reference (NIH)ZC3H12B
Genomic and cartography
GoldenPath hg38 (UCSC)ZC3H12B  -     chrX:65488735-65507887 +  Xq12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZC3H12B  -     Xq12   [Description]    (hg19-Feb_2009)
GoldenPathZC3H12B - Xq12 [CytoView hg19]  ZC3H12B - Xq12 [CytoView hg38]
ImmunoBaseENSG00000102053
Genome Data Viewer NCBIZC3H12B [Mapview hg19]  
OMIM300889   
Gene and transcription
Genbank (Entrez)AK091685 AL712229 BC140767 BC171781 BU688472
RefSeq transcript (Entrez)NM_001010888
Consensus coding sequences : CCDS (NCBI)ZC3H12B
Gene ExpressionZC3H12B [ NCBI-GEO ]   ZC3H12B [ EBI - ARRAY_EXPRESS ]   ZC3H12B [ SEEK ]   ZC3H12B [ MEM ]
Gene Expression Viewer (FireBrowse)ZC3H12B [ Firebrowse - Broad ]
GenevisibleExpression of ZC3H12B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340554
GTEX Portal (Tissue expression)ZC3H12B
Human Protein AtlasENSG00000102053-ZC3H12B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5HYM0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5HYM0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5HYM0
Catalytic activity : Enzyme3.1.-.- [ Enzyme-Expasy ]   3.1.-.-3.1.-.- [ IntEnz-EBI ]   3.1.-.- [ BRENDA ]   3.1.-.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ5HYM0
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Rege-1_UBA-like    Regnase_1/ZC3H12_C    RNase_Zc3h12_NYN    Znf_CCCH   
Domain families : Pfam (Sanger)Regnase_1_C (PF18561)    RNase_Zc3h12a (PF11977)    UBA_6 (PF18039)   
Domain families : Pfam (NCBI)pfam18561    pfam11977    pfam18039   
Conserved Domain (NCBI)ZC3H12B
PDB (RSDB)6SJD   
PDB Europe6SJD   
PDB (PDBSum)6SJD   
PDB (IMB)6SJD   
Structural Biology KnowledgeBase6SJD   
SCOP (Structural Classification of Proteins)6SJD   
CATH (Classification of proteins structures)6SJD   
SuperfamilyQ5HYM0
AlphaFold pdb e-kbQ5HYM0   
Human Protein Atlas [tissue]ENSG00000102053-ZC3H12B [tissue]
HPRD16774
Protein Interaction databases
DIP (DOE-UCLA)Q5HYM0
IntAct (EBI)Q5HYM0
BioGRIDZC3H12B
STRING (EMBL)ZC3H12B
ZODIACZC3H12B
Ontologies - Pathways
QuickGOQ5HYM0
Ontology : AmiGOmRNA binding  endoribonuclease activity  nucleus  cytoplasmic ribonucleoprotein granule  metal ion binding  RNA phosphodiester bond hydrolysis, endonucleolytic  
Ontology : EGO-EBImRNA binding  endoribonuclease activity  nucleus  cytoplasmic ribonucleoprotein granule  metal ion binding  RNA phosphodiester bond hydrolysis, endonucleolytic  
NDEx NetworkZC3H12B
Atlas of Cancer Signalling NetworkZC3H12B
Wikipedia pathwaysZC3H12B
Orthology - Evolution
OrthoDB340554
GeneTree (enSembl)ENSG00000102053
Phylogenetic Trees/Animal Genes : TreeFamZC3H12B
Homologs : HomoloGeneZC3H12B
Homology/Alignments : Family Browser (UCSC)ZC3H12B
Gene fusions - Rearrangements
Fusion : QuiverZC3H12B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZC3H12B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZC3H12B
dbVarZC3H12B
ClinVarZC3H12B
MonarchZC3H12B
1000_GenomesZC3H12B 
Exome Variant ServerZC3H12B
GNOMAD BrowserENSG00000102053
Varsome BrowserZC3H12B
ACMGZC3H12B variants
VarityQ5HYM0
Genomic Variants (DGV)ZC3H12B [DGVbeta]
DECIPHERZC3H12B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZC3H12B 
Mutations
ICGC Data PortalZC3H12B 
TCGA Data PortalZC3H12B 
Broad Tumor PortalZC3H12B
OASIS PortalZC3H12B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZC3H12B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZC3H12B
Mutations and Diseases : HGMDZC3H12B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZC3H12B
DgiDB (Drug Gene Interaction Database)ZC3H12B
DoCM (Curated mutations)ZC3H12B
CIViC (Clinical Interpretations of Variants in Cancer)ZC3H12B
Cancer3DZC3H12B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300889   
Orphanet
DisGeNETZC3H12B
MedgenZC3H12B
Genetic Testing Registry ZC3H12B
NextProtQ5HYM0 [Medical]
GENETestsZC3H12B
Target ValidationZC3H12B
Huge Navigator ZC3H12B [HugePedia]
ClinGenZC3H12B
Clinical trials, drugs, therapy
MyCancerGenomeZC3H12B
Protein Interactions : CTDZC3H12B
Pharm GKB GenePA134942463
PharosQ5HYM0
Clinical trialZC3H12B
Miscellaneous
canSAR (ICR)ZC3H12B
HarmonizomeZC3H12B
DataMed IndexZC3H12B
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZC3H12B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:28:54 CEST 2021

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