Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZC3H12B (zinc finger CCCH-type containing 12B)

Identity

Alias_namesCXorf32
chromosome X open reading frame 32
Alias_symbol (synonym)MCPIP2
Other alias
HGNC (Hugo) ZC3H12B
LocusID (NCBI) 340554
Atlas_Id 75878
Location Xq12  [Link to chromosome band Xq12]
Location_base_pair Starts at 65488735 and ends at 65507887 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZC3H12B   17407
Cards
Entrez_Gene (NCBI)ZC3H12B  340554  zinc finger CCCH-type containing 12B
AliasesCXorf32; MCPIP2
GeneCards (Weizmann)ZC3H12B
Ensembl hg19 (Hinxton)ENSG00000102053 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102053 [Gene_View]  chrX:65488735-65507887 [Contig_View]  ZC3H12B [Vega]
ICGC DataPortalENSG00000102053
TCGA cBioPortalZC3H12B
AceView (NCBI)ZC3H12B
Genatlas (Paris)ZC3H12B
WikiGenes340554
SOURCE (Princeton)ZC3H12B
Genetics Home Reference (NIH)ZC3H12B
Genomic and cartography
GoldenPath hg38 (UCSC)ZC3H12B  -     chrX:65488735-65507887 +  Xq12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZC3H12B  -     Xq12   [Description]    (hg19-Feb_2009)
EnsemblZC3H12B - Xq12 [CytoView hg19]  ZC3H12B - Xq12 [CytoView hg38]
Mapping of homologs : NCBIZC3H12B [Mapview hg19]  ZC3H12B [Mapview hg38]
OMIM300889   
Gene and transcription
Genbank (Entrez)AK091685 AL712229 BC140767 BC171781 BU688472
RefSeq transcript (Entrez)NM_001010888
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZC3H12B
Cluster EST : UnigeneHs.21249 [ NCBI ]
CGAP (NCI)Hs.21249
Alternative Splicing GalleryENSG00000102053
Gene ExpressionZC3H12B [ NCBI-GEO ]   ZC3H12B [ EBI - ARRAY_EXPRESS ]   ZC3H12B [ SEEK ]   ZC3H12B [ MEM ]
Gene Expression Viewer (FireBrowse)ZC3H12B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340554
GTEX Portal (Tissue expression)ZC3H12B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5HYM0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5HYM0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5HYM0
Splice isoforms : SwissVarQ5HYM0
Catalytic activity : Enzyme3.1.-.- [ Enzyme-Expasy ]   3.1.-.-3.1.-.- [ IntEnz-EBI ]   3.1.-.- [ BRENDA ]   3.1.-.- [ KEGG ]   
PhosPhoSitePlusQ5HYM0
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)RNase_Zc3h12_NYN    Znf_CCCH   
Domain families : Pfam (Sanger)RNase_Zc3h12a (PF11977)   
Domain families : Pfam (NCBI)pfam11977   
Conserved Domain (NCBI)ZC3H12B
DMDM Disease mutations340554
Blocks (Seattle)ZC3H12B
SuperfamilyQ5HYM0
Human Protein AtlasENSG00000102053
Peptide AtlasQ5HYM0
HPRD16774
IPIIPI00939228   IPI00232764   IPI00974013   
Protein Interaction databases
DIP (DOE-UCLA)Q5HYM0
IntAct (EBI)Q5HYM0
FunCoupENSG00000102053
BioGRIDZC3H12B
STRING (EMBL)ZC3H12B
ZODIACZC3H12B
Ontologies - Pathways
QuickGOQ5HYM0
Ontology : AmiGOendonuclease activity  metal ion binding  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBIendonuclease activity  metal ion binding  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkZC3H12B
Atlas of Cancer Signalling NetworkZC3H12B
Wikipedia pathwaysZC3H12B
Orthology - Evolution
OrthoDB340554
GeneTree (enSembl)ENSG00000102053
Phylogenetic Trees/Animal Genes : TreeFamZC3H12B
HOVERGENQ5HYM0
HOGENOMQ5HYM0
Homologs : HomoloGeneZC3H12B
Homology/Alignments : Family Browser (UCSC)ZC3H12B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZC3H12B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZC3H12B
dbVarZC3H12B
ClinVarZC3H12B
1000_GenomesZC3H12B 
Exome Variant ServerZC3H12B
ExAC (Exome Aggregation Consortium)ZC3H12B (select the gene name)
Genetic variants : HAPMAP340554
Genomic Variants (DGV)ZC3H12B [DGVbeta]
DECIPHERZC3H12B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZC3H12B 
Mutations
ICGC Data PortalZC3H12B 
TCGA Data PortalZC3H12B 
Broad Tumor PortalZC3H12B
OASIS PortalZC3H12B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZC3H12B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZC3H12B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ZC3H12B
DgiDB (Drug Gene Interaction Database)ZC3H12B
DoCM (Curated mutations)ZC3H12B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZC3H12B (select a term)
intoGenZC3H12B
Cancer3DZC3H12B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300889   
Orphanet
MedgenZC3H12B
Genetic Testing Registry ZC3H12B
NextProtQ5HYM0 [Medical]
TSGene340554
GENETestsZC3H12B
Target ValidationZC3H12B
Huge Navigator ZC3H12B [HugePedia]
snp3D : Map Gene to Disease340554
BioCentury BCIQZC3H12B
ClinGenZC3H12B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340554
Chemical/Pharm GKB GenePA134942463
Clinical trialZC3H12B
Miscellaneous
canSAR (ICR)ZC3H12B (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZC3H12B
EVEXZC3H12B
GoPubMedZC3H12B
iHOPZC3H12B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:49:30 CEST 2017

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