Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZC3H12C (zinc finger CCCH-type containing 12C)

Identity

Alias_symbol (synonym)KIAA1726
MCPIP3
Other alias
HGNC (Hugo) ZC3H12C
LocusID (NCBI) 85463
Atlas_Id 75879
Location 11q22.3  [Link to chromosome band 11q22]
Location_base_pair Starts at 110093361 and ends at 110171841 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LHFP (13q13.3) / ZC3H12C (11q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZC3H12C   29362
Cards
Entrez_Gene (NCBI)ZC3H12C  85463  zinc finger CCCH-type containing 12C
AliasesMCPIP3
GeneCards (Weizmann)ZC3H12C
Ensembl hg19 (Hinxton)ENSG00000149289 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149289 [Gene_View]  chr11:110093361-110171841 [Contig_View]  ZC3H12C [Vega]
ICGC DataPortalENSG00000149289
TCGA cBioPortalZC3H12C
AceView (NCBI)ZC3H12C
Genatlas (Paris)ZC3H12C
WikiGenes85463
SOURCE (Princeton)ZC3H12C
Genetics Home Reference (NIH)ZC3H12C
Genomic and cartography
GoldenPath hg38 (UCSC)ZC3H12C  -     chr11:110093361-110171841 +  11q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZC3H12C  -     11q22.3   [Description]    (hg19-Feb_2009)
EnsemblZC3H12C - 11q22.3 [CytoView hg19]  ZC3H12C - 11q22.3 [CytoView hg38]
Mapping of homologs : NCBIZC3H12C [Mapview hg19]  ZC3H12C [Mapview hg38]
OMIM615001   
Gene and transcription
Genbank (Entrez)AB051513 AB096241 AK095101 AK295437 AK299100
RefSeq transcript (Entrez)NM_033390
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZC3H12C
Cluster EST : UnigeneHs.376289 [ NCBI ]
CGAP (NCI)Hs.376289
Alternative Splicing GalleryENSG00000149289
Gene ExpressionZC3H12C [ NCBI-GEO ]   ZC3H12C [ EBI - ARRAY_EXPRESS ]   ZC3H12C [ SEEK ]   ZC3H12C [ MEM ]
Gene Expression Viewer (FireBrowse)ZC3H12C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85463
GTEX Portal (Tissue expression)ZC3H12C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0D7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0D7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0D7
Splice isoforms : SwissVarQ9C0D7
Catalytic activity : Enzyme3.1.-.- [ Enzyme-Expasy ]   3.1.-.-3.1.-.- [ IntEnz-EBI ]   3.1.-.- [ BRENDA ]   3.1.-.- [ KEGG ]   
PhosPhoSitePlusQ9C0D7
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)RNase_Zc3h12_NYN    Znf_CCCH   
Domain families : Pfam (Sanger)RNase_Zc3h12a (PF11977)   
Domain families : Pfam (NCBI)pfam11977   
Conserved Domain (NCBI)ZC3H12C
DMDM Disease mutations85463
Blocks (Seattle)ZC3H12C
SuperfamilyQ9C0D7
Human Protein AtlasENSG00000149289
Peptide AtlasQ9C0D7
IPIIPI00981939   IPI00738367   IPI00974303   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0D7
IntAct (EBI)Q9C0D7
FunCoupENSG00000149289
BioGRIDZC3H12C
STRING (EMBL)ZC3H12C
ZODIACZC3H12C
Ontologies - Pathways
QuickGOQ9C0D7
Ontology : AmiGOmolecular_function  endonuclease activity  cellular_component  biological_process  metal ion binding  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBImolecular_function  endonuclease activity  cellular_component  biological_process  metal ion binding  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkZC3H12C
Atlas of Cancer Signalling NetworkZC3H12C
Wikipedia pathwaysZC3H12C
Orthology - Evolution
OrthoDB85463
GeneTree (enSembl)ENSG00000149289
Phylogenetic Trees/Animal Genes : TreeFamZC3H12C
HOVERGENQ9C0D7
HOGENOMQ9C0D7
Homologs : HomoloGeneZC3H12C
Homology/Alignments : Family Browser (UCSC)ZC3H12C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZC3H12C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZC3H12C
dbVarZC3H12C
ClinVarZC3H12C
1000_GenomesZC3H12C 
Exome Variant ServerZC3H12C
ExAC (Exome Aggregation Consortium)ZC3H12C (select the gene name)
Genetic variants : HAPMAP85463
Genomic Variants (DGV)ZC3H12C [DGVbeta]
DECIPHERZC3H12C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZC3H12C 
Mutations
ICGC Data PortalZC3H12C 
TCGA Data PortalZC3H12C 
Broad Tumor PortalZC3H12C
OASIS PortalZC3H12C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZC3H12C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZC3H12C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZC3H12C
DgiDB (Drug Gene Interaction Database)ZC3H12C
DoCM (Curated mutations)ZC3H12C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZC3H12C (select a term)
intoGenZC3H12C
Cancer3DZC3H12C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615001   
Orphanet
MedgenZC3H12C
Genetic Testing Registry ZC3H12C
NextProtQ9C0D7 [Medical]
TSGene85463
GENETestsZC3H12C
Target ValidationZC3H12C
Huge Navigator ZC3H12C [HugePedia]
snp3D : Map Gene to Disease85463
BioCentury BCIQZC3H12C
ClinGenZC3H12C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85463
Chemical/Pharm GKB GenePA128394739
Clinical trialZC3H12C
Miscellaneous
canSAR (ICR)ZC3H12C (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZC3H12C
EVEXZC3H12C
GoPubMedZC3H12C
iHOPZC3H12C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:09 CEST 2017

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