Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZC3H13 (zinc finger CCCH-type containing 13)

Identity

Alias_namesKIAA0853
KIAA0853
Alias_symbol (synonym)DKFZp434D1812
Other alias
HGNC (Hugo) ZC3H13
LocusID (NCBI) 23091
Atlas_Id 75880
Location 13q14.13  [Link to chromosome band 13q14]
Location_base_pair Starts at 45954465 and ends at 46052778 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IVNS1ABP (1q25.3) / ZC3H13 (13q14.13)KMT2A (11q23.3) / ZC3H13 (13q14.13)NFE2L2 (2q31.2) / ZC3H13 (13q14.13)
PRRC2C (1q24.3) / ZC3H13 (13q14.13)SNX6 (14q13.1) / ZC3H13 (13q14.13)ZC3H13 (13q14.13) / FAM96A (15q22.31)
ZC3H13 (13q14.13) / TMEM232 (5q22.1)ZC3H13 (13q14.13) / ZC3H13 (13q14.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZC3H13   20368
Cards
Entrez_Gene (NCBI)ZC3H13  23091  zinc finger CCCH-type containing 13
AliasesKIAA0853
GeneCards (Weizmann)ZC3H13
Ensembl hg19 (Hinxton)ENSG00000123200 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123200 [Gene_View]  chr13:45954465-46052778 [Contig_View]  ZC3H13 [Vega]
ICGC DataPortalENSG00000123200
TCGA cBioPortalZC3H13
AceView (NCBI)ZC3H13
Genatlas (Paris)ZC3H13
WikiGenes23091
SOURCE (Princeton)ZC3H13
Genetics Home Reference (NIH)ZC3H13
Genomic and cartography
GoldenPath hg38 (UCSC)ZC3H13  -     chr13:45954465-46052778 -  13q14.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZC3H13  -     13q14.13   [Description]    (hg19-Feb_2009)
EnsemblZC3H13 - 13q14.13 [CytoView hg19]  ZC3H13 - 13q14.13 [CytoView hg38]
Mapping of homologs : NCBIZC3H13 [Mapview hg19]  ZC3H13 [Mapview hg38]
OMIM616453   
Gene and transcription
Genbank (Entrez)AB020660 AI640521 AK001815 AK056422 AK074924
RefSeq transcript (Entrez)NM_001076788 NM_001330564 NM_001330565 NM_001330566 NM_001330567 NM_015070
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZC3H13
Cluster EST : UnigeneHs.136102 [ NCBI ]
CGAP (NCI)Hs.136102
Alternative Splicing GalleryENSG00000123200
Gene ExpressionZC3H13 [ NCBI-GEO ]   ZC3H13 [ EBI - ARRAY_EXPRESS ]   ZC3H13 [ SEEK ]   ZC3H13 [ MEM ]
Gene Expression Viewer (FireBrowse)ZC3H13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23091
GTEX Portal (Tissue expression)ZC3H13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T200   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T200  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T200
Splice isoforms : SwissVarQ5T200
PhosPhoSitePlusQ5T200
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Znf_CCCH   
Domain families : Pfam (Sanger)zf-CCCH (PF00642)   
Domain families : Pfam (NCBI)pfam00642   
Domain families : Smart (EMBL)ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)ZC3H13
DMDM Disease mutations23091
Blocks (Seattle)ZC3H13
SuperfamilyQ5T200
Human Protein AtlasENSG00000123200
Peptide AtlasQ5T200
HPRD08307
IPIIPI00329547   IPI00016472   IPI01015073   IPI00641623   
Protein Interaction databases
DIP (DOE-UCLA)Q5T200
IntAct (EBI)Q5T200
FunCoupENSG00000123200
BioGRIDZC3H13
STRING (EMBL)ZC3H13
ZODIACZC3H13
Ontologies - Pathways
QuickGOQ5T200
Ontology : AmiGORNA binding  protein binding  nucleoplasm  nuclear speck  metal ion binding  
Ontology : EGO-EBIRNA binding  protein binding  nucleoplasm  nuclear speck  metal ion binding  
NDEx NetworkZC3H13
Atlas of Cancer Signalling NetworkZC3H13
Wikipedia pathwaysZC3H13
Orthology - Evolution
OrthoDB23091
GeneTree (enSembl)ENSG00000123200
Phylogenetic Trees/Animal Genes : TreeFamZC3H13
HOVERGENQ5T200
HOGENOMQ5T200
Homologs : HomoloGeneZC3H13
Homology/Alignments : Family Browser (UCSC)ZC3H13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZC3H13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZC3H13
dbVarZC3H13
ClinVarZC3H13
1000_GenomesZC3H13 
Exome Variant ServerZC3H13
ExAC (Exome Aggregation Consortium)ZC3H13 (select the gene name)
Genetic variants : HAPMAP23091
Genomic Variants (DGV)ZC3H13 [DGVbeta]
DECIPHERZC3H13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZC3H13 
Mutations
ICGC Data PortalZC3H13 
TCGA Data PortalZC3H13 
Broad Tumor PortalZC3H13
OASIS PortalZC3H13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZC3H13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZC3H13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZC3H13
DgiDB (Drug Gene Interaction Database)ZC3H13
DoCM (Curated mutations)ZC3H13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZC3H13 (select a term)
intoGenZC3H13
Cancer3DZC3H13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616453   
Orphanet
MedgenZC3H13
Genetic Testing Registry ZC3H13
NextProtQ5T200 [Medical]
TSGene23091
GENETestsZC3H13
Target ValidationZC3H13
Huge Navigator ZC3H13 [HugePedia]
snp3D : Map Gene to Disease23091
BioCentury BCIQZC3H13
ClinGenZC3H13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23091
Chemical/Pharm GKB GenePA134907656
Clinical trialZC3H13
Miscellaneous
canSAR (ICR)ZC3H13 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZC3H13
EVEXZC3H13
GoPubMedZC3H13
iHOPZC3H13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:09 CEST 2017

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