Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZC3H14 (zinc finger CCCH-type containing 14)

Identity

Alias_symbol (synonym)FLJ11806
UKp68
NY-REN-37
Other aliasMRT56
MSUT-2
SUT2
HGNC (Hugo) ZC3H14
LocusID (NCBI) 79882
Atlas_Id 75881
Location 14q31.3  [Link to chromosome band 14q31]
Location_base_pair Starts at 88562909 and ends at 88613509 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC12A2 (5q23.3) / ZC3H14 (14q31.3)ZC3H14 (14q31.3) / ZC3H14 (14q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZC3H14   20509
Cards
Entrez_Gene (NCBI)ZC3H14  79882  zinc finger CCCH-type containing 14
AliasesMRT56; MSUT-2; NY-REN-37; SUT2; 
UKp68
GeneCards (Weizmann)ZC3H14
Ensembl hg19 (Hinxton)ENSG00000100722 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100722 [Gene_View]  ENSG00000100722 [Sequence]  chr14:88562909-88613509 [Contig_View]  ZC3H14 [Vega]
ICGC DataPortalENSG00000100722
TCGA cBioPortalZC3H14
AceView (NCBI)ZC3H14
Genatlas (Paris)ZC3H14
WikiGenes79882
SOURCE (Princeton)ZC3H14
Genetics Home Reference (NIH)ZC3H14
Genomic and cartography
GoldenPath hg38 (UCSC)ZC3H14  -     chr14:88562909-88613509 +  14q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZC3H14  -     14q31.3   [Description]    (hg19-Feb_2009)
EnsemblZC3H14 - 14q31.3 [CytoView hg19]  ZC3H14 - 14q31.3 [CytoView hg38]
Mapping of homologs : NCBIZC3H14 [Mapview hg19]  ZC3H14 [Mapview hg38]
OMIM613279   617125   
Gene and transcription
Genbank (Entrez)AF155107 AF474376 AK021868 AK090809 AK302136
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZC3H14
Cluster EST : UnigeneHs.686171 [ NCBI ]
CGAP (NCI)Hs.686171
Alternative Splicing GalleryENSG00000100722
Gene ExpressionZC3H14 [ NCBI-GEO ]   ZC3H14 [ EBI - ARRAY_EXPRESS ]   ZC3H14 [ SEEK ]   ZC3H14 [ MEM ]
Gene Expression Viewer (FireBrowse)ZC3H14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79882
GTEX Portal (Tissue expression)ZC3H14
Human Protein AtlasENSG00000100722-ZC3H14 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PJT7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PJT7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PJT7
Splice isoforms : SwissVarQ6PJT7
PhosPhoSitePlusQ6PJT7
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Znf_CCCH   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)ZC3H14
DMDM Disease mutations79882
Blocks (Seattle)ZC3H14
SuperfamilyQ6PJT7
Human Protein Atlas [tissue]ENSG00000100722-ZC3H14 [tissue]
Peptide AtlasQ6PJT7
HPRD13348
IPI###############################################################################################################################################################################################################################################################   
Protein Interaction databases
DIP (DOE-UCLA)Q6PJT7
IntAct (EBI)Q6PJT7
FunCoupENSG00000100722
BioGRIDZC3H14
STRING (EMBL)ZC3H14
ZODIACZC3H14
Ontologies - Pathways
QuickGOQ6PJT7
Ontology : AmiGORNA binding  protein binding  nucleus  nucleolus  cytoplasm  nuclear speck  metal ion binding  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  nucleolus  cytoplasm  nuclear speck  metal ion binding  
NDEx NetworkZC3H14
Atlas of Cancer Signalling NetworkZC3H14
Wikipedia pathwaysZC3H14
Orthology - Evolution
OrthoDB79882
GeneTree (enSembl)ENSG00000100722
Phylogenetic Trees/Animal Genes : TreeFamZC3H14
HOVERGENQ6PJT7
HOGENOMQ6PJT7
Homologs : HomoloGeneZC3H14
Homology/Alignments : Family Browser (UCSC)ZC3H14
Gene fusions - Rearrangements
Fusion : QuiverZC3H14
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZC3H14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZC3H14
dbVarZC3H14
ClinVarZC3H14
1000_GenomesZC3H14 
Exome Variant ServerZC3H14
ExAC (Exome Aggregation Consortium)ENSG00000100722
GNOMAD BrowserENSG00000100722
Varsome BrowserZC3H14
Genetic variants : HAPMAP79882
Genomic Variants (DGV)ZC3H14 [DGVbeta]
DECIPHERZC3H14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZC3H14 
Mutations
ICGC Data PortalZC3H14 
TCGA Data PortalZC3H14 
Broad Tumor PortalZC3H14
OASIS PortalZC3H14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZC3H14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZC3H14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZC3H14
DgiDB (Drug Gene Interaction Database)ZC3H14
DoCM (Curated mutations)ZC3H14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZC3H14 (select a term)
intoGenZC3H14
Cancer3DZC3H14(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613279    617125   
Orphanet11804   
DisGeNETZC3H14
MedgenZC3H14
Genetic Testing Registry ZC3H14
NextProtQ6PJT7 [Medical]
TSGene79882
GENETestsZC3H14
Target ValidationZC3H14
Huge Navigator ZC3H14 [HugePedia]
snp3D : Map Gene to Disease79882
BioCentury BCIQZC3H14
ClinGenZC3H14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79882
Chemical/Pharm GKB GenePA145007270
Clinical trialZC3H14
Miscellaneous
canSAR (ICR)ZC3H14 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZC3H14
EVEXZC3H14
GoPubMedZC3H14
iHOPZC3H14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:38:54 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.