Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZC3H15 (zinc finger CCCH-type containing 15)

Identity

Alias_nameserythropoietin 4
Alias_symbol (synonym)LEREPO4
Other aliasHT010
MSTP012
HGNC (Hugo) ZC3H15
LocusID (NCBI) 55854
Atlas_Id 53803
Location 2q32.1  [Link to chromosome band 2q32]
Location_base_pair Starts at 186486158 and ends at 186509360 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GOLGA3 (12q24.33) / ZC3H15 (2q32.1)ZC3H15 (2q32.1) / CPS1 (2q34)ZC3H15 (2q32.1) / GULP1 (2q32.1)
ZC3H15 (2q32.1) / SERINC1 (6q22.31)ZC3H15 2q32.1 / CPS1 2q34ZC3H15 2q32.1 / GULP1 2q32.1
ZC3H15 2q32.1 / SERINC1 6q22.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZC3H15   29528
Cards
Entrez_Gene (NCBI)ZC3H15  55854  zinc finger CCCH-type containing 15
AliasesHT010; LEREPO4; MSTP012
GeneCards (Weizmann)ZC3H15
Ensembl hg19 (Hinxton)ENSG00000065548 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000065548 [Gene_View]  chr2:186486158-186509360 [Contig_View]  ZC3H15 [Vega]
ICGC DataPortalENSG00000065548
TCGA cBioPortalZC3H15
AceView (NCBI)ZC3H15
Genatlas (Paris)ZC3H15
WikiGenes55854
SOURCE (Princeton)ZC3H15
Genetics Home Reference (NIH)ZC3H15
Genomic and cartography
GoldenPath hg38 (UCSC)ZC3H15  -     chr2:186486158-186509360 +  2q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZC3H15  -     2q32.1   [Description]    (hg19-Feb_2009)
EnsemblZC3H15 - 2q32.1 [CytoView hg19]  ZC3H15 - 2q32.1 [CytoView hg38]
Mapping of homologs : NCBIZC3H15 [Mapview hg19]  ZC3H15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF109366 AF147724 AF161421 AF220184 AF289586
RefSeq transcript (Entrez)NM_018471
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZC3H15
Cluster EST : UnigeneHs.741180 [ NCBI ]
CGAP (NCI)Hs.741180
Alternative Splicing GalleryENSG00000065548
Gene ExpressionZC3H15 [ NCBI-GEO ]   ZC3H15 [ EBI - ARRAY_EXPRESS ]   ZC3H15 [ SEEK ]   ZC3H15 [ MEM ]
Gene Expression Viewer (FireBrowse)ZC3H15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55854
GTEX Portal (Tissue expression)ZC3H15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WU90   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WU90  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WU90
Splice isoforms : SwissVarQ8WU90
PhosPhoSitePlusQ8WU90
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)ZC3H15/TMA46_C    Znf_CCCH   
Domain families : Pfam (Sanger)DFRP_C (PF16543)    zf-CCCH (PF00642)   
Domain families : Pfam (NCBI)pfam16543    pfam00642   
Domain families : Smart (EMBL)ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)ZC3H15
DMDM Disease mutations55854
Blocks (Seattle)ZC3H15
SuperfamilyQ8WU90
Human Protein AtlasENSG00000065548
Peptide AtlasQ8WU90
HPRD13988
IPIIPI00909823   IPI01010979   IPI00000279   IPI00927412   IPI00926769   IPI00927837   
Protein Interaction databases
DIP (DOE-UCLA)Q8WU90
IntAct (EBI)Q8WU90
FunCoupENSG00000065548
BioGRIDZC3H15
STRING (EMBL)ZC3H15
ZODIACZC3H15
Ontologies - Pathways
QuickGOQ8WU90
Ontology : AmiGORNA binding  protein binding  nucleolus  cytosol  cytokine-mediated signaling pathway  cadherin binding  metal ion binding  
Ontology : EGO-EBIRNA binding  protein binding  nucleolus  cytosol  cytokine-mediated signaling pathway  cadherin binding  metal ion binding  
NDEx NetworkZC3H15
Atlas of Cancer Signalling NetworkZC3H15
Wikipedia pathwaysZC3H15
Orthology - Evolution
OrthoDB55854
GeneTree (enSembl)ENSG00000065548
Phylogenetic Trees/Animal Genes : TreeFamZC3H15
HOVERGENQ8WU90
HOGENOMQ8WU90
Homologs : HomoloGeneZC3H15
Homology/Alignments : Family Browser (UCSC)ZC3H15
Gene fusions - Rearrangements
Fusion : MitelmanZC3H15/CPS1 [2q32.1/2q34]  
Fusion : MitelmanZC3H15/GULP1 [2q32.1/2q32.1]  [t(2;2)(q32;q32)]  
Fusion : MitelmanZC3H15/SERINC1 [2q32.1/6q22.31]  [t(2;6)(q32;q22)]  
Fusion: TCGAZC3H15 2q32.1 CPS1 2q34 PRAD
Fusion: TCGAZC3H15 2q32.1 GULP1 2q32.1 SKCM
Fusion: TCGAZC3H15 2q32.1 SERINC1 6q22.31 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZC3H15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZC3H15
dbVarZC3H15
ClinVarZC3H15
1000_GenomesZC3H15 
Exome Variant ServerZC3H15
ExAC (Exome Aggregation Consortium)ZC3H15 (select the gene name)
Genetic variants : HAPMAP55854
Genomic Variants (DGV)ZC3H15 [DGVbeta]
DECIPHERZC3H15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZC3H15 
Mutations
ICGC Data PortalZC3H15 
TCGA Data PortalZC3H15 
Broad Tumor PortalZC3H15
OASIS PortalZC3H15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZC3H15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZC3H15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZC3H15
DgiDB (Drug Gene Interaction Database)ZC3H15
DoCM (Curated mutations)ZC3H15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZC3H15 (select a term)
intoGenZC3H15
Cancer3DZC3H15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZC3H15
Genetic Testing Registry ZC3H15
NextProtQ8WU90 [Medical]
TSGene55854
GENETestsZC3H15
Target ValidationZC3H15
Huge Navigator ZC3H15 [HugePedia]
snp3D : Map Gene to Disease55854
BioCentury BCIQZC3H15
ClinGenZC3H15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55854
Chemical/Pharm GKB GenePA162409508
Clinical trialZC3H15
Miscellaneous
canSAR (ICR)ZC3H15 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZC3H15
EVEXZC3H15
GoPubMedZC3H15
iHOPZC3H15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:03:21 CEST 2017

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