Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZC3H18 (zinc finger CCCH-type containing 18)

Identity

Alias_symbol (synonym)NHN1
Other alias
HGNC (Hugo) ZC3H18
LocusID (NCBI) 124245
Atlas_Id 75882
Location 16q24.2  [Link to chromosome band 16q24]
Location_base_pair Starts at 88570381 and ends at 88631964 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CTU2 (16q24.3) / ZC3H18 (16q24.2)GATAD2A (19p13.11) / ZC3H18 (16q24.2)ZC3H18 (16q24.2) / CHMP1A (16q24.3)
ZC3H18 (16q24.2) / NFASC (1q32.1)ZC3H18 (16q24.2) / RACK1 (5q35.3)ZC3H18 (16q24.2) / TMSB10 (2p11.2)
ZC3H18 (16q24.2) / ZC3H18 (16q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZC3H18   25091
Cards
Entrez_Gene (NCBI)ZC3H18  124245  zinc finger CCCH-type containing 18
AliasesNHN1
GeneCards (Weizmann)ZC3H18
Ensembl hg19 (Hinxton)ENSG00000158545 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158545 [Gene_View]  chr16:88570381-88631964 [Contig_View]  ZC3H18 [Vega]
ICGC DataPortalENSG00000158545
TCGA cBioPortalZC3H18
AceView (NCBI)ZC3H18
Genatlas (Paris)ZC3H18
WikiGenes124245
SOURCE (Princeton)ZC3H18
Genetics Home Reference (NIH)ZC3H18
Genomic and cartography
GoldenPath hg38 (UCSC)ZC3H18  -     chr16:88570381-88631964 +  16q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZC3H18  -     16q24.2   [Description]    (hg19-Feb_2009)
EnsemblZC3H18 - 16q24.2 [CytoView hg19]  ZC3H18 - 16q24.2 [CytoView hg38]
Mapping of homologs : NCBIZC3H18 [Mapview hg19]  ZC3H18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026317 AK091849 AK093394 AK122593 AK225807
RefSeq transcript (Entrez)NM_001294340 NM_144604
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZC3H18
Cluster EST : UnigeneHs.93670 [ NCBI ]
CGAP (NCI)Hs.93670
Alternative Splicing GalleryENSG00000158545
Gene ExpressionZC3H18 [ NCBI-GEO ]   ZC3H18 [ EBI - ARRAY_EXPRESS ]   ZC3H18 [ SEEK ]   ZC3H18 [ MEM ]
Gene Expression Viewer (FireBrowse)ZC3H18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124245
GTEX Portal (Tissue expression)ZC3H18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VM9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VM9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VM9
Splice isoforms : SwissVarQ86VM9
PhosPhoSitePlusQ86VM9
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Znf_CCCH   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)ZC3H18
DMDM Disease mutations124245
Blocks (Seattle)ZC3H18
SuperfamilyQ86VM9
Human Protein AtlasENSG00000158545
Peptide AtlasQ86VM9
HPRD11232
IPIIPI00328929   IPI00293312   IPI00908725   IPI00910847   IPI00384762   
Protein Interaction databases
DIP (DOE-UCLA)Q86VM9
IntAct (EBI)Q86VM9
FunCoupENSG00000158545
BioGRIDZC3H18
STRING (EMBL)ZC3H18
ZODIACZC3H18
Ontologies - Pathways
QuickGOQ86VM9
Ontology : AmiGORNA binding  protein binding  nuclear speck  protein complex  metal ion binding  
Ontology : EGO-EBIRNA binding  protein binding  nuclear speck  protein complex  metal ion binding  
NDEx NetworkZC3H18
Atlas of Cancer Signalling NetworkZC3H18
Wikipedia pathwaysZC3H18
Orthology - Evolution
OrthoDB124245
GeneTree (enSembl)ENSG00000158545
Phylogenetic Trees/Animal Genes : TreeFamZC3H18
HOVERGENQ86VM9
HOGENOMQ86VM9
Homologs : HomoloGeneZC3H18
Homology/Alignments : Family Browser (UCSC)ZC3H18
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZC3H18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZC3H18
dbVarZC3H18
ClinVarZC3H18
1000_GenomesZC3H18 
Exome Variant ServerZC3H18
ExAC (Exome Aggregation Consortium)ZC3H18 (select the gene name)
Genetic variants : HAPMAP124245
Genomic Variants (DGV)ZC3H18 [DGVbeta]
DECIPHERZC3H18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZC3H18 
Mutations
ICGC Data PortalZC3H18 
TCGA Data PortalZC3H18 
Broad Tumor PortalZC3H18
OASIS PortalZC3H18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZC3H18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZC3H18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZC3H18
DgiDB (Drug Gene Interaction Database)ZC3H18
DoCM (Curated mutations)ZC3H18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZC3H18 (select a term)
intoGenZC3H18
Cancer3DZC3H18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZC3H18
Genetic Testing Registry ZC3H18
NextProtQ86VM9 [Medical]
TSGene124245
GENETestsZC3H18
Target ValidationZC3H18
Huge Navigator ZC3H18 [HugePedia]
snp3D : Map Gene to Disease124245
BioCentury BCIQZC3H18
ClinGenZC3H18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124245
Chemical/Pharm GKB GenePA162409533
Clinical trialZC3H18
Miscellaneous
canSAR (ICR)ZC3H18 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZC3H18
EVEXZC3H18
GoPubMedZC3H18
iHOPZC3H18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:10 CEST 2017

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