Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZC3H4 (zinc finger CCCH-type containing 4)

Identity

Alias_namesC19orf7
chromosome 19 open reading frame 7
Alias_symbol (synonym)KIAA1064
Other alias
HGNC (Hugo) ZC3H4
LocusID (NCBI) 23211
Atlas_Id 75885
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 47567447 and ends at 47617009 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZC3H4 (19q13.32) / POLR2I (19q13.12)ZC3H4 (19q13.32) / PRL (6p22.3)ZC3H4 (19q13.32) / TTLL3 (3p25.3)
ZC3H4 (19q13.32) / ZC3H4 (19q13.32)ZC3H4 (19q13.32) / ZNF8 (19q13.43)ZC3H4 POLR2I
ZC3H4 TTLL3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZC3H4   17808
Cards
Entrez_Gene (NCBI)ZC3H4  23211  zinc finger CCCH-type containing 4
AliasesC19orf7
GeneCards (Weizmann)ZC3H4
Ensembl hg19 (Hinxton)ENSG00000130749 [Gene_View]  chr19:47567447-47617009 [Contig_View]  ZC3H4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000130749 [Gene_View]  chr19:47567447-47617009 [Contig_View]  ZC3H4 [Vega]
ICGC DataPortalENSG00000130749
TCGA cBioPortalZC3H4
AceView (NCBI)ZC3H4
Genatlas (Paris)ZC3H4
WikiGenes23211
SOURCE (Princeton)ZC3H4
Genetics Home Reference (NIH)ZC3H4
Genomic and cartography
GoldenPath hg19 (UCSC)ZC3H4  -     chr19:47567447-47617009 -  19q13.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZC3H4  -     19q13.32   [Description]    (hg38-Dec_2013)
EnsemblZC3H4 - 19q13.32 [CytoView hg19]  ZC3H4 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBIZC3H4 [Mapview hg19]  ZC3H4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB028987 AK074282 AK125279 AL050155 AW603637
RefSeq transcript (Entrez)NM_015168
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_027798 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZC3H4
Cluster EST : UnigeneHs.104661 [ NCBI ]
CGAP (NCI)Hs.104661
Alternative Splicing GalleryENSG00000130749
Gene ExpressionZC3H4 [ NCBI-GEO ]   ZC3H4 [ EBI - ARRAY_EXPRESS ]   ZC3H4 [ SEEK ]   ZC3H4 [ MEM ]
Gene Expression Viewer (FireBrowse)ZC3H4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23211
GTEX Portal (Tissue expression)ZC3H4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UPT8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UPT8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UPT8
Splice isoforms : SwissVarQ9UPT8
PhosPhoSitePlusQ9UPT8
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Znf_CCCH   
Domain families : Pfam (Sanger)zf-CCCH (PF00642)   
Domain families : Pfam (NCBI)pfam00642   
Domain families : Smart (EMBL)ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)ZC3H4
DMDM Disease mutations23211
Blocks (Seattle)ZC3H4
PDB (SRS)2CQE   
PDB (PDBSum)2CQE   
PDB (IMB)2CQE   
PDB (RSDB)2CQE   
Structural Biology KnowledgeBase2CQE   
SCOP (Structural Classification of Proteins)2CQE   
CATH (Classification of proteins structures)2CQE   
SuperfamilyQ9UPT8
Human Protein AtlasENSG00000130749
Peptide AtlasQ9UPT8
IPIIPI00187011   
Protein Interaction databases
DIP (DOE-UCLA)Q9UPT8
IntAct (EBI)Q9UPT8
FunCoupENSG00000130749
BioGRIDZC3H4
STRING (EMBL)ZC3H4
ZODIACZC3H4
Ontologies - Pathways
QuickGOQ9UPT8
Ontology : AmiGOpoly(A) RNA binding  metal ion binding  
Ontology : EGO-EBIpoly(A) RNA binding  metal ion binding  
NDEx NetworkZC3H4
Atlas of Cancer Signalling NetworkZC3H4
Wikipedia pathwaysZC3H4
Orthology - Evolution
OrthoDB23211
GeneTree (enSembl)ENSG00000130749
Phylogenetic Trees/Animal Genes : TreeFamZC3H4
HOVERGENQ9UPT8
HOGENOMQ9UPT8
Homologs : HomoloGeneZC3H4
Homology/Alignments : Family Browser (UCSC)ZC3H4
Gene fusions - Rearrangements
Fusion: TCGAZC3H4 POLR2I
Fusion: TCGAZC3H4 TTLL3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZC3H4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZC3H4
dbVarZC3H4
ClinVarZC3H4
1000_GenomesZC3H4 
Exome Variant ServerZC3H4
ExAC (Exome Aggregation Consortium)ZC3H4 (select the gene name)
Genetic variants : HAPMAP23211
Genomic Variants (DGV)ZC3H4 [DGVbeta]
DECIPHER (Syndromes)19:47567447-47617009  ENSG00000130749
CONAN: Copy Number AnalysisZC3H4 
Mutations
ICGC Data PortalZC3H4 
TCGA Data PortalZC3H4 
Broad Tumor PortalZC3H4
OASIS PortalZC3H4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZC3H4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZC3H4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZC3H4
DgiDB (Drug Gene Interaction Database)ZC3H4
DoCM (Curated mutations)ZC3H4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZC3H4 (select a term)
intoGenZC3H4
Cancer3DZC3H4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZC3H4
Genetic Testing Registry ZC3H4
NextProtQ9UPT8 [Medical]
TSGene23211
GENETestsZC3H4
Huge Navigator ZC3H4 [HugePedia]
snp3D : Map Gene to Disease23211
BioCentury BCIQZC3H4
ClinGenZC3H4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23211
Chemical/Pharm GKB GenePA162409534
Clinical trialZC3H4
Miscellaneous
canSAR (ICR)ZC3H4 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZC3H4
EVEXZC3H4
GoPubMedZC3H4
iHOPZC3H4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:52:10 CET 2017

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