Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZC3H6 (zinc finger CCCH-type containing 6)

Identity

Alias_namesZC3HDC6
zinc finger CCCH-type domain containing 6
Alias_symbol (synonym)FLJ41410
FLJ45877
KIAA2035
Other alias
HGNC (Hugo) ZC3H6
LocusID (NCBI) 376940
Atlas_Id 75886
Location 2q14.1  [Link to chromosome band 2q14]
Location_base_pair Starts at 112275601 and ends at 112340063 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TCF4 (18q21.2) / ZC3H6 (2q13)ZC3H6 (2q13) / ZC3H6 (2q13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZC3H6   24762
Cards
Entrez_Gene (NCBI)ZC3H6  376940  zinc finger CCCH-type containing 6
AliasesZC3HDC6
GeneCards (Weizmann)ZC3H6
Ensembl hg19 (Hinxton)ENSG00000188177 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188177 [Gene_View]  chr2:112275601-112340063 [Contig_View]  ZC3H6 [Vega]
ICGC DataPortalENSG00000188177
TCGA cBioPortalZC3H6
AceView (NCBI)ZC3H6
Genatlas (Paris)ZC3H6
WikiGenes376940
SOURCE (Princeton)ZC3H6
Genetics Home Reference (NIH)ZC3H6
Genomic and cartography
GoldenPath hg38 (UCSC)ZC3H6  -     chr2:112275601-112340063 +  2q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZC3H6  -     2q14.1   [Description]    (hg19-Feb_2009)
EnsemblZC3H6 - 2q14.1 [CytoView hg19]  ZC3H6 - 2q14.1 [CytoView hg38]
Mapping of homologs : NCBIZC3H6 [Mapview hg19]  ZC3H6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB111887 AK123404 AK127776 AK131416 AL831901
RefSeq transcript (Entrez)NM_198581
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZC3H6
Cluster EST : UnigeneHs.190477 [ NCBI ]
CGAP (NCI)Hs.190477
Alternative Splicing GalleryENSG00000188177
Gene ExpressionZC3H6 [ NCBI-GEO ]   ZC3H6 [ EBI - ARRAY_EXPRESS ]   ZC3H6 [ SEEK ]   ZC3H6 [ MEM ]
Gene Expression Viewer (FireBrowse)ZC3H6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)376940
GTEX Portal (Tissue expression)ZC3H6
Protein : pattern, domain, 3D structure
UniProt/SwissProtP61129   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP61129  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP61129
Splice isoforms : SwissVarP61129
PhosPhoSitePlusP61129
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Znf_CCCH   
Domain families : Pfam (Sanger)zf-CCCH (PF00642)   
Domain families : Pfam (NCBI)pfam00642   
Domain families : Smart (EMBL)ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)ZC3H6
DMDM Disease mutations376940
Blocks (Seattle)ZC3H6
SuperfamilyP61129
Human Protein AtlasENSG00000188177
Peptide AtlasP61129
HPRD15698
IPIIPI00410656   IPI01009808   
Protein Interaction databases
DIP (DOE-UCLA)P61129
IntAct (EBI)P61129
FunCoupENSG00000188177
BioGRIDZC3H6
STRING (EMBL)ZC3H6
ZODIACZC3H6
Ontologies - Pathways
QuickGOP61129
Ontology : AmiGOmolecular_function  cellular_component  biological_process  metal ion binding  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  metal ion binding  
NDEx NetworkZC3H6
Atlas of Cancer Signalling NetworkZC3H6
Wikipedia pathwaysZC3H6
Orthology - Evolution
OrthoDB376940
GeneTree (enSembl)ENSG00000188177
Phylogenetic Trees/Animal Genes : TreeFamZC3H6
HOVERGENP61129
HOGENOMP61129
Homologs : HomoloGeneZC3H6
Homology/Alignments : Family Browser (UCSC)ZC3H6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZC3H6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZC3H6
dbVarZC3H6
ClinVarZC3H6
1000_GenomesZC3H6 
Exome Variant ServerZC3H6
ExAC (Exome Aggregation Consortium)ZC3H6 (select the gene name)
Genetic variants : HAPMAP376940
Genomic Variants (DGV)ZC3H6 [DGVbeta]
DECIPHERZC3H6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZC3H6 
Mutations
ICGC Data PortalZC3H6 
TCGA Data PortalZC3H6 
Broad Tumor PortalZC3H6
OASIS PortalZC3H6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZC3H6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZC3H6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZC3H6
DgiDB (Drug Gene Interaction Database)ZC3H6
DoCM (Curated mutations)ZC3H6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZC3H6 (select a term)
intoGenZC3H6
Cancer3DZC3H6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZC3H6
Genetic Testing Registry ZC3H6
NextProtP61129 [Medical]
TSGene376940
GENETestsZC3H6
Target ValidationZC3H6
Huge Navigator ZC3H6 [HugePedia]
snp3D : Map Gene to Disease376940
BioCentury BCIQZC3H6
ClinGenZC3H6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD376940
Chemical/Pharm GKB GenePA134883473
Clinical trialZC3H6
Miscellaneous
canSAR (ICR)ZC3H6 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZC3H6
EVEXZC3H6
GoPubMedZC3H6
iHOPZC3H6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:32 CEST 2017

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