Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZC3H7A (zinc finger CCCH-type containing 7A)

Identity

Alias (NCBI)HSPC055
ZC3H7
ZC3HDC7
HGNC (Hugo) ZC3H7A
HGNC Alias symbHSPC055
FLJ20318
HGNC Previous nameZC3HDC7
 ZC3H7
HGNC Previous namezinc finger CCCH-type domain containing 7
 zinc finger CCCH-type containing 7
LocusID (NCBI) 29066
Atlas_Id 54792
Location 16p13.13  [Link to chromosome band 16p13]
Location_base_pair Starts at 11750597 and ends at 11797258 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CYTH1 (17q25.3) / ZC3H7A (16p13.13)TXNDC11 (16p13.13) / ZC3H7A (16p13.13)ZC3H7A (16p13.13) / PLCB4 (20p12.2)
TXNDC11 16p13.13 / ZC3H7A 16p13.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZC3H7A   30959
Cards
Entrez_Gene (NCBI)ZC3H7A    zinc finger CCCH-type containing 7A
AliasesHSPC055; ZC3H7; ZC3HDC7
GeneCards (Weizmann)ZC3H7A
Ensembl hg19 (Hinxton)ENSG00000122299 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122299 [Gene_View]  ENSG00000122299 [Sequence]  chr16:11750597-11797258 [Contig_View]  ZC3H7A [Vega]
ICGC DataPortalENSG00000122299
TCGA cBioPortalZC3H7A
AceView (NCBI)ZC3H7A
Genatlas (Paris)ZC3H7A
SOURCE (Princeton)ZC3H7A
Genetics Home Reference (NIH)ZC3H7A
Genomic and cartography
GoldenPath hg38 (UCSC)ZC3H7A  -     chr16:11750597-11797258 -  16p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZC3H7A  -     16p13.13   [Description]    (hg19-Feb_2009)
GoldenPathZC3H7A - 16p13.13 [CytoView hg19]  ZC3H7A - 16p13.13 [CytoView hg38]
ImmunoBaseENSG00000122299
genome Data Viewer NCBIZC3H7A [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF161540 AK000325 AK000889 AK001869 AK026827
RefSeq transcript (Entrez)NM_014153
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZC3H7A
Alternative Splicing GalleryENSG00000122299
Gene ExpressionZC3H7A [ NCBI-GEO ]   ZC3H7A [ EBI - ARRAY_EXPRESS ]   ZC3H7A [ SEEK ]   ZC3H7A [ MEM ]
Gene Expression Viewer (FireBrowse)ZC3H7A [ Firebrowse - Broad ]
GenevisibleExpression of ZC3H7A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29066
GTEX Portal (Tissue expression)ZC3H7A
Human Protein AtlasENSG00000122299-ZC3H7A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWR0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWR0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWR0
Splice isoforms : SwissVarQ8IWR0
PhosPhoSitePlusQ8IWR0
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)    ZINC_FINGER_C2H2_1 (PS00028)   
Domains : Interpro (EBI)TPR-like_helical_dom_sf    ZC3H7A/B    Znf_C2H2_sf    Znf_CCCH    Znf_CCCH_sf   
Domain families : Pfam (Sanger)zf-CCCH (PF00642)   
Domain families : Pfam (NCBI)pfam00642   
Domain families : Smart (EMBL)ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)ZC3H7A
Blocks (Seattle)ZC3H7A
PDB (RSDB)2D9M   
PDB Europe2D9M   
PDB (PDBSum)2D9M   
PDB (IMB)2D9M   
Structural Biology KnowledgeBase2D9M   
SCOP (Structural Classification of Proteins)2D9M   
CATH (Classification of proteins structures)2D9M   
SuperfamilyQ8IWR0
Human Protein Atlas [tissue]ENSG00000122299-ZC3H7A [tissue]
Peptide AtlasQ8IWR0
HPRD11694
IPIIPI00217355   IPI00607547   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWR0
IntAct (EBI)Q8IWR0
BioGRIDZC3H7A
STRING (EMBL)ZC3H7A
ZODIACZC3H7A
Ontologies - Pathways
QuickGOQ8IWR0
Ontology : AmiGORNA binding  nucleus  posttranscriptional regulation of gene expression  production of miRNAs involved in gene silencing by miRNA  production of miRNAs involved in gene silencing by miRNA  miRNA binding  miRNA binding  metal ion binding  
Ontology : EGO-EBIRNA binding  nucleus  posttranscriptional regulation of gene expression  production of miRNAs involved in gene silencing by miRNA  production of miRNAs involved in gene silencing by miRNA  miRNA binding  miRNA binding  metal ion binding  
NDEx NetworkZC3H7A
Atlas of Cancer Signalling NetworkZC3H7A
Wikipedia pathwaysZC3H7A
Orthology - Evolution
OrthoDB29066
GeneTree (enSembl)ENSG00000122299
Phylogenetic Trees/Animal Genes : TreeFamZC3H7A
HOGENOMQ8IWR0
Homologs : HomoloGeneZC3H7A
Homology/Alignments : Family Browser (UCSC)ZC3H7A
Gene fusions - Rearrangements
Fusion : MitelmanTXNDC11/ZC3H7A [16p13.13/16p13.13]  
Fusion PortalTXNDC11 16p13.13 ZC3H7A 16p13.13 BRCA
Fusion : QuiverZC3H7A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZC3H7A [hg38]
dbVarZC3H7A
ClinVarZC3H7A
MonarchZC3H7A
1000_GenomesZC3H7A 
Exome Variant ServerZC3H7A
GNOMAD BrowserENSG00000122299
Varsome BrowserZC3H7A
Genomic Variants (DGV)ZC3H7A [DGVbeta]
DECIPHERZC3H7A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZC3H7A 
Mutations
ICGC Data PortalZC3H7A 
TCGA Data PortalZC3H7A 
Broad Tumor PortalZC3H7A
OASIS PortalZC3H7A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZC3H7A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZC3H7A
Mutations and Diseases : HGMDZC3H7A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZC3H7A
DgiDB (Drug Gene Interaction Database)ZC3H7A
DoCM (Curated mutations)ZC3H7A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZC3H7A (select a term)
intoGenZC3H7A
Cancer3DZC3H7A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZC3H7A
MedgenZC3H7A
Genetic Testing Registry ZC3H7A
NextProtQ8IWR0 [Medical]
GENETestsZC3H7A
Target ValidationZC3H7A
Huge Navigator ZC3H7A [HugePedia]
ClinGenZC3H7A
Clinical trials, drugs, therapy
MyCancerGenomeZC3H7A
Protein Interactions : CTD
Pharm GKB GenePA128394652
PharosQ8IWR0
Clinical trialZC3H7A
Miscellaneous
canSAR (ICR)ZC3H7A (select the gene name)
HarmonizomeZC3H7A
DataMed IndexZC3H7A
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZC3H7A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 25 19:53:28 CET 2021
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