Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZC3H7A (zinc finger CCCH-type containing 7A)

Identity

Alias_namesZC3HDC7
ZC3H7
zinc finger CCCH-type domain containing 7
zinc finger CCCH-type containing 7
Alias_symbol (synonym)HSPC055
FLJ20318
Other alias
HGNC (Hugo) ZC3H7A
LocusID (NCBI) 29066
Atlas_Id 54792
Location 16p13.13  [Link to chromosome band 16p13]
Location_base_pair Starts at 11844442 and ends at 11891114 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CYTH1 (17q25.3) / ZC3H7A (16p13.13)TXNDC11 (16p13.13) / ZC3H7A (16p13.13)ZC3H7A (16p13.13) / PLCB4 (20p12.2)
TXNDC11 16p13.13 / ZC3H7A 16p13.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZC3H7A   30959
Cards
Entrez_Gene (NCBI)ZC3H7A  29066  zinc finger CCCH-type containing 7A
AliasesHSPC055; ZC3H7; ZC3HDC7
GeneCards (Weizmann)ZC3H7A
Ensembl hg19 (Hinxton)ENSG00000122299 [Gene_View]  chr16:11844442-11891114 [Contig_View]  ZC3H7A [Vega]
Ensembl hg38 (Hinxton)ENSG00000122299 [Gene_View]  chr16:11844442-11891114 [Contig_View]  ZC3H7A [Vega]
ICGC DataPortalENSG00000122299
TCGA cBioPortalZC3H7A
AceView (NCBI)ZC3H7A
Genatlas (Paris)ZC3H7A
WikiGenes29066
SOURCE (Princeton)ZC3H7A
Genetics Home Reference (NIH)ZC3H7A
Genomic and cartography
GoldenPath hg19 (UCSC)ZC3H7A  -     chr16:11844442-11891114 -  16p13.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZC3H7A  -     16p13.13   [Description]    (hg38-Dec_2013)
EnsemblZC3H7A - 16p13.13 [CytoView hg19]  ZC3H7A - 16p13.13 [CytoView hg38]
Mapping of homologs : NCBIZC3H7A [Mapview hg19]  ZC3H7A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF161540 AK000325 AK000889 AK001869 AK026827
RefSeq transcript (Entrez)NM_014153
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)ZC3H7A
Cluster EST : UnigeneHs.371856 [ NCBI ]
CGAP (NCI)Hs.371856
Alternative Splicing GalleryENSG00000122299
Gene ExpressionZC3H7A [ NCBI-GEO ]   ZC3H7A [ EBI - ARRAY_EXPRESS ]   ZC3H7A [ SEEK ]   ZC3H7A [ MEM ]
Gene Expression Viewer (FireBrowse)ZC3H7A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29066
GTEX Portal (Tissue expression)ZC3H7A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWR0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWR0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWR0
Splice isoforms : SwissVarQ8IWR0
PhosPhoSitePlusQ8IWR0
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)    ZINC_FINGER_C2H2_1 (PS00028)   
Domains : Interpro (EBI)TPR-like_helical_dom    Znf_C2H2-like    Znf_CCCH   
Domain families : Pfam (Sanger)TPR_11 (PF13414)    zf-CCCH (PF00642)   
Domain families : Pfam (NCBI)pfam13414    pfam00642   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)ZC3H7A
DMDM Disease mutations29066
Blocks (Seattle)ZC3H7A
PDB (SRS)2D9M   
PDB (PDBSum)2D9M   
PDB (IMB)2D9M   
PDB (RSDB)2D9M   
Structural Biology KnowledgeBase2D9M   
SCOP (Structural Classification of Proteins)2D9M   
CATH (Classification of proteins structures)2D9M   
SuperfamilyQ8IWR0
Human Protein AtlasENSG00000122299
Peptide AtlasQ8IWR0
HPRD11694
IPIIPI00217355   IPI00607547   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWR0
IntAct (EBI)Q8IWR0
FunCoupENSG00000122299
BioGRIDZC3H7A
STRING (EMBL)ZC3H7A
ZODIACZC3H7A
Ontologies - Pathways
QuickGOQ8IWR0
Ontology : AmiGOnucleus  poly(A) RNA binding  metal ion binding  
Ontology : EGO-EBInucleus  poly(A) RNA binding  metal ion binding  
NDEx NetworkZC3H7A
Atlas of Cancer Signalling NetworkZC3H7A
Wikipedia pathwaysZC3H7A
Orthology - Evolution
OrthoDB29066
GeneTree (enSembl)ENSG00000122299
Phylogenetic Trees/Animal Genes : TreeFamZC3H7A
HOVERGENQ8IWR0
HOGENOMQ8IWR0
Homologs : HomoloGeneZC3H7A
Homology/Alignments : Family Browser (UCSC)ZC3H7A
Gene fusions - Rearrangements
Fusion : MitelmanTXNDC11/ZC3H7A [16p13.13/16p13.13]  [t(16;16)(p13;p13)]  
Fusion: TCGATXNDC11 16p13.13 ZC3H7A 16p13.13 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZC3H7A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZC3H7A
dbVarZC3H7A
ClinVarZC3H7A
1000_GenomesZC3H7A 
Exome Variant ServerZC3H7A
ExAC (Exome Aggregation Consortium)ZC3H7A (select the gene name)
Genetic variants : HAPMAP29066
Genomic Variants (DGV)ZC3H7A [DGVbeta]
DECIPHER (Syndromes)16:11844442-11891114  ENSG00000122299
CONAN: Copy Number AnalysisZC3H7A 
Mutations
ICGC Data PortalZC3H7A 
TCGA Data PortalZC3H7A 
Broad Tumor PortalZC3H7A
OASIS PortalZC3H7A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZC3H7A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZC3H7A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZC3H7A
DgiDB (Drug Gene Interaction Database)ZC3H7A
DoCM (Curated mutations)ZC3H7A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZC3H7A (select a term)
intoGenZC3H7A
Cancer3DZC3H7A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZC3H7A
Genetic Testing Registry ZC3H7A
NextProtQ8IWR0 [Medical]
TSGene29066
GENETestsZC3H7A
Huge Navigator ZC3H7A [HugePedia]
snp3D : Map Gene to Disease29066
BioCentury BCIQZC3H7A
ClinGenZC3H7A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29066
Chemical/Pharm GKB GenePA128394652
Clinical trialZC3H7A
Miscellaneous
canSAR (ICR)ZC3H7A (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZC3H7A
EVEXZC3H7A
GoPubMedZC3H7A
iHOPZC3H7A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:34:41 CET 2017

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