Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZC3H7B (zinc finger CCCH-type containing 7B)

Identity

Alias_symbol (synonym)RoXaN
FLJ13787
DKFZp434K0920
KIAA1031
Other alias
HGNC (Hugo) ZC3H7B
LocusID (NCBI) 23264
Atlas_Id 54014
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 41301503 and ends at 41360147 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ACO2 (22q13.2) / ZC3H7B (22q13.2)FAM49A (2p24.2) / ZC3H7B (22q13.2)TNRC6B (22q13.1) / ZC3H7B (22q13.2)
ZC3H7B (22q13.2) / BCOR (Xp11.4)ZC3H7B (22q13.2) / CARKD (13q34)ZC3H7B (22q13.2) / L3MBTL2 (22q13.2)
ZC3H7B (22q13.2) / RAB5B (12q13.2)ZC3H7B (22q13.2) / SLC9A8 (20q13.13)ZC3H7B (22q13.2) / ZC3H7B (22q13.2)
ZC3H7B 22q13.2 / BCOR Xp11.4ACO2 22q13.2 / ZC3H7B 22q13.2TNRC6B 22q13.1 / ZC3H7B 22q13.2
ZC3H7B 22q13.2 / L3MBTL2 22q13.2ZC3H7B 22q13.2 / SLC9A8 20q13.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZC3H7B   30869
Cards
Entrez_Gene (NCBI)ZC3H7B  23264  zinc finger CCCH-type containing 7B
AliasesRoXaN
GeneCards (Weizmann)ZC3H7B
Ensembl hg19 (Hinxton)ENSG00000100403 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100403 [Gene_View]  chr22:41301503-41360147 [Contig_View]  ZC3H7B [Vega]
ICGC DataPortalENSG00000100403
TCGA cBioPortalZC3H7B
AceView (NCBI)ZC3H7B
Genatlas (Paris)ZC3H7B
WikiGenes23264
SOURCE (Princeton)ZC3H7B
Genetics Home Reference (NIH)ZC3H7B
Genomic and cartography
GoldenPath hg38 (UCSC)ZC3H7B  -     chr22:41301503-41360147 +  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZC3H7B  -     22q13.2   [Description]    (hg19-Feb_2009)
EnsemblZC3H7B - 22q13.2 [CytoView hg19]  ZC3H7B - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBIZC3H7B [Mapview hg19]  ZC3H7B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB028954 AF188530 AK023849 AK225891 AK315009
RefSeq transcript (Entrez)NM_017590
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZC3H7B
Cluster EST : UnigeneHs.592188 [ NCBI ]
CGAP (NCI)Hs.592188
Alternative Splicing GalleryENSG00000100403
Gene ExpressionZC3H7B [ NCBI-GEO ]   ZC3H7B [ EBI - ARRAY_EXPRESS ]   ZC3H7B [ SEEK ]   ZC3H7B [ MEM ]
Gene Expression Viewer (FireBrowse)ZC3H7B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23264
GTEX Portal (Tissue expression)ZC3H7B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UGR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UGR2
Splice isoforms : SwissVarQ9UGR2
PhosPhoSitePlusQ9UGR2
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)    ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_repeat    Znf_CCCH   
Domain families : Pfam (Sanger)TPR_8 (PF13181)    zf-CCCH (PF00642)   
Domain families : Pfam (NCBI)pfam13181    pfam00642   
Domain families : Smart (EMBL)TPR (SM00028)  ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)ZC3H7B
DMDM Disease mutations23264
Blocks (Seattle)ZC3H7B
SuperfamilyQ9UGR2
Human Protein AtlasENSG00000100403
Peptide AtlasQ9UGR2
HPRD06711
IPIIPI00099131   IPI00216361   IPI00442406   IPI00816776   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGR2
IntAct (EBI)Q9UGR2
FunCoupENSG00000100403
BioGRIDZC3H7B
STRING (EMBL)ZC3H7B
ZODIACZC3H7B
Ontologies - Pathways
QuickGOQ9UGR2
Ontology : AmiGORNA binding  protein binding  nucleus  viral process  metal ion binding  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  viral process  metal ion binding  
NDEx NetworkZC3H7B
Atlas of Cancer Signalling NetworkZC3H7B
Wikipedia pathwaysZC3H7B
Orthology - Evolution
OrthoDB23264
GeneTree (enSembl)ENSG00000100403
Phylogenetic Trees/Animal Genes : TreeFamZC3H7B
HOVERGENQ9UGR2
HOGENOMQ9UGR2
Homologs : HomoloGeneZC3H7B
Homology/Alignments : Family Browser (UCSC)ZC3H7B
Gene fusions - Rearrangements
Fusion : MitelmanACO2/ZC3H7B [22q13.2/22q13.2]  [t(22;22)(q13;q13)]  
Fusion : MitelmanTNRC6B/ZC3H7B [22q13.1/22q13.2]  [t(22;22)(q13;q13)]  
Fusion : MitelmanZC3H7B/BCOR [22q13.2/Xp11.4]  [t(X;22)(p11;q13)]  
Fusion : MitelmanZC3H7B/L3MBTL2 [22q13.2/22q13.2]  [t(22;22)(q13;q13)]  
Fusion : MitelmanZC3H7B/SLC9A8 [22q13.2/20q13.13]  [t(20;22)(q13;q13)]  
Fusion: TCGAACO2 22q13.2 ZC3H7B 22q13.2 BRCA
Fusion: TCGATNRC6B 22q13.1 ZC3H7B 22q13.2 LUAD
Fusion: TCGAZC3H7B 22q13.2 L3MBTL2 22q13.2 BRCA
Fusion: TCGAZC3H7B 22q13.2 SLC9A8 20q13.13 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZC3H7B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZC3H7B
dbVarZC3H7B
ClinVarZC3H7B
1000_GenomesZC3H7B 
Exome Variant ServerZC3H7B
ExAC (Exome Aggregation Consortium)ZC3H7B (select the gene name)
Genetic variants : HAPMAP23264
Genomic Variants (DGV)ZC3H7B [DGVbeta]
DECIPHERZC3H7B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZC3H7B 
Mutations
ICGC Data PortalZC3H7B 
TCGA Data PortalZC3H7B 
Broad Tumor PortalZC3H7B
OASIS PortalZC3H7B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZC3H7B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZC3H7B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZC3H7B
DgiDB (Drug Gene Interaction Database)ZC3H7B
DoCM (Curated mutations)ZC3H7B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZC3H7B (select a term)
intoGenZC3H7B
Cancer3DZC3H7B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZC3H7B
Genetic Testing Registry ZC3H7B
NextProtQ9UGR2 [Medical]
TSGene23264
GENETestsZC3H7B
Huge Navigator ZC3H7B [HugePedia]
snp3D : Map Gene to Disease23264
BioCentury BCIQZC3H7B
ClinGenZC3H7B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23264
Chemical/Pharm GKB GenePA142670533
Clinical trialZC3H7B
Miscellaneous
canSAR (ICR)ZC3H7B (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZC3H7B
EVEXZC3H7B
GoPubMedZC3H7B
iHOPZC3H7B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:44:36 CEST 2017

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