Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZC3HAV1L (zinc finger CCCH-type containing, antiviral 1 like)

Identity

Alias_namesC7orf39
chromosome 7 open reading frame 39
Alias_symbol (synonym)MGC14289
Other alias
HGNC (Hugo) ZC3HAV1L
LocusID (NCBI) 92092
Atlas_Id 54793
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 139025706 and ends at 139036029 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZC3HAV1L (7q34) / CHMP1A (16q24.3)ZC3HAV1L (7q34) / LAMC2 (1q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZC3HAV1L   22423
Cards
Entrez_Gene (NCBI)ZC3HAV1L  92092  zinc finger CCCH-type containing, antiviral 1 like
AliasesC7orf39
GeneCards (Weizmann)ZC3HAV1L
Ensembl hg19 (Hinxton)ENSG00000146858 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146858 [Gene_View]  chr7:139025706-139036029 [Contig_View]  ZC3HAV1L [Vega]
ICGC DataPortalENSG00000146858
TCGA cBioPortalZC3HAV1L
AceView (NCBI)ZC3HAV1L
Genatlas (Paris)ZC3HAV1L
WikiGenes92092
SOURCE (Princeton)ZC3HAV1L
Genetics Home Reference (NIH)ZC3HAV1L
Genomic and cartography
GoldenPath hg38 (UCSC)ZC3HAV1L  -     chr7:139025706-139036029 -  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZC3HAV1L  -     7q34   [Description]    (hg19-Feb_2009)
EnsemblZC3HAV1L - 7q34 [CytoView hg19]  ZC3HAV1L - 7q34 [CytoView hg38]
Mapping of homologs : NCBIZC3HAV1L [Mapview hg19]  ZC3HAV1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098156 BC008842 BC020784
RefSeq transcript (Entrez)NM_080660
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZC3HAV1L
Cluster EST : UnigeneHs.659143 [ NCBI ]
CGAP (NCI)Hs.659143
Alternative Splicing GalleryENSG00000146858
Gene ExpressionZC3HAV1L [ NCBI-GEO ]   ZC3HAV1L [ EBI - ARRAY_EXPRESS ]   ZC3HAV1L [ SEEK ]   ZC3HAV1L [ MEM ]
Gene Expression Viewer (FireBrowse)ZC3HAV1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92092
GTEX Portal (Tissue expression)ZC3HAV1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96H79   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96H79  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96H79
Splice isoforms : SwissVarQ96H79
PhosPhoSitePlusQ96H79
Domains : Interpro (EBI)Zc3hav1-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZC3HAV1L
DMDM Disease mutations92092
Blocks (Seattle)ZC3HAV1L
SuperfamilyQ96H79
Human Protein AtlasENSG00000146858
Peptide AtlasQ96H79
HPRD14440
IPIIPI00062866   IPI00477731   
Protein Interaction databases
DIP (DOE-UCLA)Q96H79
IntAct (EBI)Q96H79
FunCoupENSG00000146858
BioGRIDZC3HAV1L
STRING (EMBL)ZC3HAV1L
ZODIACZC3HAV1L
Ontologies - Pathways
QuickGOQ96H79
Ontology : AmiGOcytosol  
Ontology : EGO-EBIcytosol  
NDEx NetworkZC3HAV1L
Atlas of Cancer Signalling NetworkZC3HAV1L
Wikipedia pathwaysZC3HAV1L
Orthology - Evolution
OrthoDB92092
GeneTree (enSembl)ENSG00000146858
Phylogenetic Trees/Animal Genes : TreeFamZC3HAV1L
HOVERGENQ96H79
HOGENOMQ96H79
Homologs : HomoloGeneZC3HAV1L
Homology/Alignments : Family Browser (UCSC)ZC3HAV1L
Gene fusions - Rearrangements
Fusion : MitelmanZC3HAV1L/CHMP1A [7q34/16q24.3]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZC3HAV1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZC3HAV1L
dbVarZC3HAV1L
ClinVarZC3HAV1L
1000_GenomesZC3HAV1L 
Exome Variant ServerZC3HAV1L
ExAC (Exome Aggregation Consortium)ZC3HAV1L (select the gene name)
Genetic variants : HAPMAP92092
Genomic Variants (DGV)ZC3HAV1L [DGVbeta]
DECIPHERZC3HAV1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZC3HAV1L 
Mutations
ICGC Data PortalZC3HAV1L 
TCGA Data PortalZC3HAV1L 
Broad Tumor PortalZC3HAV1L
OASIS PortalZC3HAV1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZC3HAV1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZC3HAV1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZC3HAV1L
DgiDB (Drug Gene Interaction Database)ZC3HAV1L
DoCM (Curated mutations)ZC3HAV1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZC3HAV1L (select a term)
intoGenZC3HAV1L
Cancer3DZC3HAV1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZC3HAV1L
Genetic Testing Registry ZC3HAV1L
NextProtQ96H79 [Medical]
TSGene92092
GENETestsZC3HAV1L
Target ValidationZC3HAV1L
Huge Navigator ZC3HAV1L [HugePedia]
snp3D : Map Gene to Disease92092
BioCentury BCIQZC3HAV1L
ClinGenZC3HAV1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92092
Chemical/Pharm GKB GenePA145147600
Clinical trialZC3HAV1L
Miscellaneous
canSAR (ICR)ZC3HAV1L (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZC3HAV1L
EVEXZC3HAV1L
GoPubMedZC3HAV1L
iHOPZC3HAV1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:03:22 CEST 2017

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