Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZC3HC1 (zinc finger C3HC-type containing 1)

Identity

Alias_symbol (synonym)NIPA
Other aliasHSPC216
HGNC (Hugo) ZC3HC1
LocusID (NCBI) 51530
Atlas_Id 482
Location 7q32.2  [Link to chromosome band 7q32]
Location_base_pair Starts at 130018286 and ends at 130051451 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MTMR1 (Xq28) / ZC3HC1 (7q32.2)ZC3HC1 (7q32.2) / HMGCS1 (5p12)ZC3HC1 (7q32.2) / MTMR1 (Xq28)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZC3HC1   29913
Cards
Entrez_Gene (NCBI)ZC3HC1  51530  zinc finger C3HC-type containing 1
AliasesHSPC216; NIPA
GeneCards (Weizmann)ZC3HC1
Ensembl hg19 (Hinxton)ENSG00000091732 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000091732 [Gene_View]  chr7:130018286-130051451 [Contig_View]  ZC3HC1 [Vega]
ICGC DataPortalENSG00000091732
TCGA cBioPortalZC3HC1
AceView (NCBI)ZC3HC1
Genatlas (Paris)ZC3HC1
WikiGenes51530
SOURCE (Princeton)ZC3HC1
Genetics Home Reference (NIH)ZC3HC1
Genomic and cartography
GoldenPath hg38 (UCSC)ZC3HC1  -     chr7:130018286-130051451 -  7q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZC3HC1  -     7q32.2   [Description]    (hg19-Feb_2009)
EnsemblZC3HC1 - 7q32.2 [CytoView hg19]  ZC3HC1 - 7q32.2 [CytoView hg38]
Mapping of homologs : NCBIZC3HC1 [Mapview hg19]  ZC3HC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151050 AJ537494 AK001317 AK022373 AM393415
RefSeq transcript (Entrez)NM_001282190 NM_001282191 NM_016478
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZC3HC1
Cluster EST : UnigeneHs.194157 [ NCBI ]
CGAP (NCI)Hs.194157
Alternative Splicing GalleryENSG00000091732
Gene ExpressionZC3HC1 [ NCBI-GEO ]   ZC3HC1 [ EBI - ARRAY_EXPRESS ]   ZC3HC1 [ SEEK ]   ZC3HC1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZC3HC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51530
GTEX Portal (Tissue expression)ZC3HC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WB0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WB0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WB0
Splice isoforms : SwissVarQ86WB0
PhosPhoSitePlusQ86WB0
Domains : Interpro (EBI)NIPA/Rsm1    Znf_C3HC-like   
Domain families : Pfam (Sanger)Rsm1 (PF08600)    zf-C3HC (PF07967)   
Domain families : Pfam (NCBI)pfam08600    pfam07967   
Conserved Domain (NCBI)ZC3HC1
DMDM Disease mutations51530
Blocks (Seattle)ZC3HC1
SuperfamilyQ86WB0
Human Protein AtlasENSG00000091732
Peptide AtlasQ86WB0
IPIIPI00301421   IPI00339382   IPI00479595   IPI00386888   IPI00944902   IPI00945081   IPI00944908   IPI00945399   IPI00945058   IPI00945376   
Protein Interaction databases
DIP (DOE-UCLA)Q86WB0
IntAct (EBI)Q86WB0
FunCoupENSG00000091732
BioGRIDZC3HC1
STRING (EMBL)ZC3HC1
ZODIACZC3HC1
Ontologies - Pathways
QuickGOQ86WB0
Ontology : AmiGOprotein binding  nucleus  nucleus  cell cycle  zinc ion binding  protein ubiquitination  protein kinase binding  nuclear membrane  cell division  negative regulation of extrinsic apoptotic signaling pathway in absence of ligand  
Ontology : EGO-EBIprotein binding  nucleus  nucleus  cell cycle  zinc ion binding  protein ubiquitination  protein kinase binding  nuclear membrane  cell division  negative regulation of extrinsic apoptotic signaling pathway in absence of ligand  
NDEx NetworkZC3HC1
Atlas of Cancer Signalling NetworkZC3HC1
Wikipedia pathwaysZC3HC1
Orthology - Evolution
OrthoDB51530
GeneTree (enSembl)ENSG00000091732
Phylogenetic Trees/Animal Genes : TreeFamZC3HC1
HOVERGENQ86WB0
HOGENOMQ86WB0
Homologs : HomoloGeneZC3HC1
Homology/Alignments : Family Browser (UCSC)ZC3HC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZC3HC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZC3HC1
dbVarZC3HC1
ClinVarZC3HC1
1000_GenomesZC3HC1 
Exome Variant ServerZC3HC1
ExAC (Exome Aggregation Consortium)ZC3HC1 (select the gene name)
Genetic variants : HAPMAP51530
Genomic Variants (DGV)ZC3HC1 [DGVbeta]
DECIPHERZC3HC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZC3HC1 
Mutations
ICGC Data PortalZC3HC1 
TCGA Data PortalZC3HC1 
Broad Tumor PortalZC3HC1
OASIS PortalZC3HC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZC3HC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZC3HC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZC3HC1
DgiDB (Drug Gene Interaction Database)ZC3HC1
DoCM (Curated mutations)ZC3HC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZC3HC1 (select a term)
intoGenZC3HC1
Cancer3DZC3HC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZC3HC1
Genetic Testing Registry ZC3HC1
NextProtQ86WB0 [Medical]
TSGene51530
GENETestsZC3HC1
Target ValidationZC3HC1
Huge Navigator ZC3HC1 [HugePedia]
snp3D : Map Gene to Disease51530
BioCentury BCIQZC3HC1
ClinGenZC3HC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51530
Chemical/Pharm GKB GenePA134931869
Clinical trialZC3HC1
Miscellaneous
canSAR (ICR)ZC3HC1 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZC3HC1
EVEXZC3HC1
GoPubMedZC3HC1
iHOPZC3HC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:03:22 CEST 2017

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