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ZCCHC10 (zinc finger, CCHC domain containing 10)

Identity

Alias_symbol (synonym)FLJ20094
Other alias-
HGNC (Hugo) ZCCHC10
LocusID (NCBI) 54819
Atlas_Id 75889
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 132332677 and ends at 132362296 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZCCHC10 (5q31.1) / TMEM56 (1p21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZCCHC10   25954
Cards
Entrez_Gene (NCBI)ZCCHC10  54819  zinc finger, CCHC domain containing 10
Aliases
GeneCards (Weizmann)ZCCHC10
Ensembl hg19 (Hinxton)ENSG00000155329 [Gene_View]  chr5:132332677-132362296 [Contig_View]  ZCCHC10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000155329 [Gene_View]  chr5:132332677-132362296 [Contig_View]  ZCCHC10 [Vega]
ICGC DataPortalENSG00000155329
TCGA cBioPortalZCCHC10
AceView (NCBI)ZCCHC10
Genatlas (Paris)ZCCHC10
WikiGenes54819
SOURCE (Princeton)ZCCHC10
Genetics Home Reference (NIH)ZCCHC10
Genomic and cartography
GoldenPath hg19 (UCSC)ZCCHC10  -     chr5:132332677-132362296 -  5q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZCCHC10  -     5q31.1   [Description]    (hg38-Dec_2013)
EnsemblZCCHC10 - 5q31.1 [CytoView hg19]  ZCCHC10 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBIZCCHC10 [Mapview hg19]  ZCCHC10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086446 AK000101 AK122970 AK300543 BC005211
RefSeq transcript (Entrez)NM_001300816 NM_001300817 NM_001300818 NM_001300819 NM_001300822 NM_001300825 NM_001308127 NM_001308128 NM_001308129 NM_001308130 NM_017665
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)ZCCHC10
Cluster EST : UnigeneHs.29700 [ NCBI ]
CGAP (NCI)Hs.29700
Alternative Splicing GalleryENSG00000155329
Gene ExpressionZCCHC10 [ NCBI-GEO ]   ZCCHC10 [ EBI - ARRAY_EXPRESS ]   ZCCHC10 [ SEEK ]   ZCCHC10 [ MEM ]
Gene Expression Viewer (FireBrowse)ZCCHC10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54819
GTEX Portal (Tissue expression)ZCCHC10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBK6
Splice isoforms : SwissVarQ8TBK6
PhosPhoSitePlusQ8TBK6
Domains : Interpro (EBI)Znf_CCHC   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2HC (SM00343)  
Conserved Domain (NCBI)ZCCHC10
DMDM Disease mutations54819
Blocks (Seattle)ZCCHC10
SuperfamilyQ8TBK6
Human Protein AtlasENSG00000155329
Peptide AtlasQ8TBK6
HPRD15699
IPIIPI00395436   IPI00014891   IPI00967159   IPI00966397   IPI00965233   IPI00967229   IPI00968049   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBK6
IntAct (EBI)Q8TBK6
FunCoupENSG00000155329
BioGRIDZCCHC10
STRING (EMBL)ZCCHC10
ZODIACZCCHC10
Ontologies - Pathways
QuickGOQ8TBK6
Ontology : AmiGOnucleic acid binding  protein binding  zinc ion binding  
Ontology : EGO-EBInucleic acid binding  protein binding  zinc ion binding  
NDEx NetworkZCCHC10
Atlas of Cancer Signalling NetworkZCCHC10
Wikipedia pathwaysZCCHC10
Orthology - Evolution
OrthoDB54819
GeneTree (enSembl)ENSG00000155329
Phylogenetic Trees/Animal Genes : TreeFamZCCHC10
HOVERGENQ8TBK6
HOGENOMQ8TBK6
Homologs : HomoloGeneZCCHC10
Homology/Alignments : Family Browser (UCSC)ZCCHC10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZCCHC10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZCCHC10
dbVarZCCHC10
ClinVarZCCHC10
1000_GenomesZCCHC10 
Exome Variant ServerZCCHC10
ExAC (Exome Aggregation Consortium)ZCCHC10 (select the gene name)
Genetic variants : HAPMAP54819
Genomic Variants (DGV)ZCCHC10 [DGVbeta]
DECIPHER (Syndromes)5:132332677-132362296  ENSG00000155329
CONAN: Copy Number AnalysisZCCHC10 
Mutations
ICGC Data PortalZCCHC10 
TCGA Data PortalZCCHC10 
Broad Tumor PortalZCCHC10
OASIS PortalZCCHC10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZCCHC10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZCCHC10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZCCHC10
DgiDB (Drug Gene Interaction Database)ZCCHC10
DoCM (Curated mutations)ZCCHC10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZCCHC10 (select a term)
intoGenZCCHC10
Cancer3DZCCHC10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZCCHC10
Genetic Testing Registry ZCCHC10
NextProtQ8TBK6 [Medical]
TSGene54819
GENETestsZCCHC10
Huge Navigator ZCCHC10 [HugePedia]
snp3D : Map Gene to Disease54819
BioCentury BCIQZCCHC10
ClinGenZCCHC10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54819
Chemical/Pharm GKB GenePA134876515
Clinical trialZCCHC10
Miscellaneous
canSAR (ICR)ZCCHC10 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZCCHC10
EVEXZCCHC10
GoPubMedZCCHC10
iHOPZCCHC10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:52:11 CET 2017

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