Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZCCHC12 (zinc finger CCHC-type containing 12)

Identity

Alias_symbol (synonym)FLJ16123
SIZN
SIZN1
PNMA7A
Other alias
HGNC (Hugo) ZCCHC12
LocusID (NCBI) 170261
Atlas_Id 53423
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 117957706 and ends at 117960936 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZCCHC12   27273
Cards
Entrez_Gene (NCBI)ZCCHC12  170261  zinc finger CCHC-type containing 12
AliasesPNMA7A; SIZN; SIZN1
GeneCards (Weizmann)ZCCHC12
Ensembl hg19 (Hinxton)ENSG00000174460 [Gene_View]  chrX:117957706-117960936 [Contig_View]  ZCCHC12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000174460 [Gene_View]  chrX:117957706-117960936 [Contig_View]  ZCCHC12 [Vega]
ICGC DataPortalENSG00000174460
TCGA cBioPortalZCCHC12
AceView (NCBI)ZCCHC12
Genatlas (Paris)ZCCHC12
WikiGenes170261
SOURCE (Princeton)ZCCHC12
Genetics Home Reference (NIH)ZCCHC12
Genomic and cartography
GoldenPath hg19 (UCSC)ZCCHC12  -     chrX:117957706-117960936 +  Xq24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZCCHC12  -     Xq24   [Description]    (hg38-Dec_2013)
EnsemblZCCHC12 - Xq24 [CytoView hg19]  ZCCHC12 - Xq24 [CytoView hg38]
Mapping of homologs : NCBIZCCHC12 [Mapview hg19]  ZCCHC12 [Mapview hg38]
OMIM300701   
Gene and transcription
Genbank (Entrez)AK122676 AW002115 BC018066 BC031241 BC033958
RefSeq transcript (Entrez)NM_001312891 NM_173798
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_042836 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)ZCCHC12
Cluster EST : UnigeneHs.21417 [ NCBI ]
CGAP (NCI)Hs.21417
Alternative Splicing GalleryENSG00000174460
Gene ExpressionZCCHC12 [ NCBI-GEO ]   ZCCHC12 [ EBI - ARRAY_EXPRESS ]   ZCCHC12 [ SEEK ]   ZCCHC12 [ MEM ]
Gene Expression Viewer (FireBrowse)ZCCHC12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170261
GTEX Portal (Tissue expression)ZCCHC12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PEW1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PEW1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PEW1
Splice isoforms : SwissVarQ6PEW1
PhosPhoSitePlusQ6PEW1
Domains : Interpro (EBI)PNMA    Znf_CCHC   
Domain families : Pfam (Sanger)PNMA (PF14893)   
Domain families : Pfam (NCBI)pfam14893   
Domain families : Smart (EMBL)ZnF_C2HC (SM00343)  
Conserved Domain (NCBI)ZCCHC12
DMDM Disease mutations170261
Blocks (Seattle)ZCCHC12
SuperfamilyQ6PEW1
Human Protein AtlasENSG00000174460
Peptide AtlasQ6PEW1
HPRD06616
IPIIPI00166136   
Protein Interaction databases
DIP (DOE-UCLA)Q6PEW1
IntAct (EBI)Q6PEW1
FunCoupENSG00000174460
BioGRIDZCCHC12
STRING (EMBL)ZCCHC12
ZODIACZCCHC12
Ontologies - Pathways
QuickGOQ6PEW1
Ontology : AmiGOnucleic acid binding  protein binding  transcription, DNA-templated  zinc ion binding  nuclear speck  ligand-dependent nuclear receptor transcription coactivator activity  BMP signaling pathway  
Ontology : EGO-EBInucleic acid binding  protein binding  transcription, DNA-templated  zinc ion binding  nuclear speck  ligand-dependent nuclear receptor transcription coactivator activity  BMP signaling pathway  
NDEx NetworkZCCHC12
Atlas of Cancer Signalling NetworkZCCHC12
Wikipedia pathwaysZCCHC12
Orthology - Evolution
OrthoDB170261
GeneTree (enSembl)ENSG00000174460
Phylogenetic Trees/Animal Genes : TreeFamZCCHC12
HOVERGENQ6PEW1
HOGENOMQ6PEW1
Homologs : HomoloGeneZCCHC12
Homology/Alignments : Family Browser (UCSC)ZCCHC12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZCCHC12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZCCHC12
dbVarZCCHC12
ClinVarZCCHC12
1000_GenomesZCCHC12 
Exome Variant ServerZCCHC12
ExAC (Exome Aggregation Consortium)ZCCHC12 (select the gene name)
Genetic variants : HAPMAP170261
Genomic Variants (DGV)ZCCHC12 [DGVbeta]
DECIPHER (Syndromes)X:117957706-117960936  ENSG00000174460
CONAN: Copy Number AnalysisZCCHC12 
Mutations
ICGC Data PortalZCCHC12 
TCGA Data PortalZCCHC12 
Broad Tumor PortalZCCHC12
OASIS PortalZCCHC12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZCCHC12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZCCHC12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZCCHC12
DgiDB (Drug Gene Interaction Database)ZCCHC12
DoCM (Curated mutations)ZCCHC12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZCCHC12 (select a term)
intoGenZCCHC12
Cancer3DZCCHC12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300701   
Orphanet
MedgenZCCHC12
Genetic Testing Registry ZCCHC12
NextProtQ6PEW1 [Medical]
TSGene170261
GENETestsZCCHC12
Huge Navigator ZCCHC12 [HugePedia]
snp3D : Map Gene to Disease170261
BioCentury BCIQZCCHC12
ClinGenZCCHC12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170261
Chemical/Pharm GKB GenePA134885304
Clinical trialZCCHC12
Miscellaneous
canSAR (ICR)ZCCHC12 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZCCHC12
EVEXZCCHC12
GoPubMedZCCHC12
iHOPZCCHC12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:34:42 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.