Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZCCHC13 (zinc finger CCHC-type containing 13)

Identity

Alias_symbol (synonym)4930513O09RIK
Cnbp2
ZNF9L
Other aliasCNBP2
HGNC (Hugo) ZCCHC13
LocusID (NCBI) 389874
Atlas_Id 75890
Location Xq13.2  [Link to chromosome band Xq13]
Location_base_pair Starts at 74304190 and ends at 74305034 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZCCHC13   31749
Cards
Entrez_Gene (NCBI)ZCCHC13  389874  zinc finger CCHC-type containing 13
AliasesCNBP2; ZNF9L
GeneCards (Weizmann)ZCCHC13
Ensembl hg19 (Hinxton)ENSG00000187969 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187969 [Gene_View]  chrX:74304190-74305034 [Contig_View]  ZCCHC13 [Vega]
ICGC DataPortalENSG00000187969
TCGA cBioPortalZCCHC13
AceView (NCBI)ZCCHC13
Genatlas (Paris)ZCCHC13
WikiGenes389874
SOURCE (Princeton)ZCCHC13
Genetics Home Reference (NIH)ZCCHC13
Genomic and cartography
GoldenPath hg38 (UCSC)ZCCHC13  -     chrX:74304190-74305034 +  Xq13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZCCHC13  -     Xq13.2   [Description]    (hg19-Feb_2009)
EnsemblZCCHC13 - Xq13.2 [CytoView hg19]  ZCCHC13 - Xq13.2 [CytoView hg38]
Mapping of homologs : NCBIZCCHC13 [Mapview hg19]  ZCCHC13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC021176 BX109166 EU446947 EU831786 EU831864
RefSeq transcript (Entrez)NM_203303
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZCCHC13
Cluster EST : UnigeneHs.157231 [ NCBI ]
CGAP (NCI)Hs.157231
Alternative Splicing GalleryENSG00000187969
Gene ExpressionZCCHC13 [ NCBI-GEO ]   ZCCHC13 [ EBI - ARRAY_EXPRESS ]   ZCCHC13 [ SEEK ]   ZCCHC13 [ MEM ]
Gene Expression Viewer (FireBrowse)ZCCHC13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389874
GTEX Portal (Tissue expression)ZCCHC13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WW36   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WW36  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WW36
Splice isoforms : SwissVarQ8WW36
PhosPhoSitePlusQ8WW36
Domaine pattern : Prosite (Expaxy)ZF_CCHC (PS50158)   
Domains : Interpro (EBI)Znf_CCHC   
Domain families : Pfam (Sanger)zf-CCHC (PF00098)   
Domain families : Pfam (NCBI)pfam00098   
Domain families : Smart (EMBL)ZnF_C2HC (SM00343)  
Conserved Domain (NCBI)ZCCHC13
DMDM Disease mutations389874
Blocks (Seattle)ZCCHC13
SuperfamilyQ8WW36
Human Protein AtlasENSG00000187969
Peptide AtlasQ8WW36
HPRD10050
IPIIPI00397484   
Protein Interaction databases
DIP (DOE-UCLA)Q8WW36
IntAct (EBI)Q8WW36
FunCoupENSG00000187969
BioGRIDZCCHC13
STRING (EMBL)ZCCHC13
ZODIACZCCHC13
Ontologies - Pathways
QuickGOQ8WW36
Ontology : AmiGOnucleic acid binding  protein binding  zinc ion binding  
Ontology : EGO-EBInucleic acid binding  protein binding  zinc ion binding  
NDEx NetworkZCCHC13
Atlas of Cancer Signalling NetworkZCCHC13
Wikipedia pathwaysZCCHC13
Orthology - Evolution
OrthoDB389874
GeneTree (enSembl)ENSG00000187969
Phylogenetic Trees/Animal Genes : TreeFamZCCHC13
HOVERGENQ8WW36
HOGENOMQ8WW36
Homologs : HomoloGeneZCCHC13
Homology/Alignments : Family Browser (UCSC)ZCCHC13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZCCHC13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZCCHC13
dbVarZCCHC13
ClinVarZCCHC13
1000_GenomesZCCHC13 
Exome Variant ServerZCCHC13
ExAC (Exome Aggregation Consortium)ZCCHC13 (select the gene name)
Genetic variants : HAPMAP389874
Genomic Variants (DGV)ZCCHC13 [DGVbeta]
DECIPHERZCCHC13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZCCHC13 
Mutations
ICGC Data PortalZCCHC13 
TCGA Data PortalZCCHC13 
Broad Tumor PortalZCCHC13
OASIS PortalZCCHC13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZCCHC13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZCCHC13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ZCCHC13
DgiDB (Drug Gene Interaction Database)ZCCHC13
DoCM (Curated mutations)ZCCHC13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZCCHC13 (select a term)
intoGenZCCHC13
Cancer3DZCCHC13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZCCHC13
Genetic Testing Registry ZCCHC13
NextProtQ8WW36 [Medical]
TSGene389874
GENETestsZCCHC13
Target ValidationZCCHC13
Huge Navigator ZCCHC13 [HugePedia]
snp3D : Map Gene to Disease389874
BioCentury BCIQZCCHC13
ClinGenZCCHC13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389874
Chemical/Pharm GKB GenePA134926925
Clinical trialZCCHC13
Miscellaneous
canSAR (ICR)ZCCHC13 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZCCHC13
EVEXZCCHC13
GoPubMedZCCHC13
iHOPZCCHC13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:44:11 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.