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ZCCHC14 (zinc finger, CCHC domain containing 14)

Identity

Alias_symbol (synonym)BDG29
MGC14139
Other aliasBDG-29
HGNC (Hugo) ZCCHC14
LocusID (NCBI) 23174
Atlas_Id 75891
Location 16q24.2  [Link to chromosome band 16q24]
Location_base_pair Starts at 87439852 and ends at 87525460 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SCN11A (3p22.2) / ZCCHC14 (16q24.2)ZCCHC14 (16q24.2) / SNX7 (1p21.3)ZCCHC14 (16q24.2) / ZCCHC14 (16q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZCCHC14   24134
Cards
Entrez_Gene (NCBI)ZCCHC14  23174  zinc finger, CCHC domain containing 14
AliasesBDG-29; BDG29
GeneCards (Weizmann)ZCCHC14
Ensembl hg19 (Hinxton)ENSG00000140948 [Gene_View]  chr16:87439852-87525460 [Contig_View]  ZCCHC14 [Vega]
Ensembl hg38 (Hinxton)ENSG00000140948 [Gene_View]  chr16:87439852-87525460 [Contig_View]  ZCCHC14 [Vega]
ICGC DataPortalENSG00000140948
TCGA cBioPortalZCCHC14
AceView (NCBI)ZCCHC14
Genatlas (Paris)ZCCHC14
WikiGenes23174
SOURCE (Princeton)ZCCHC14
Genetics Home Reference (NIH)ZCCHC14
Genomic and cartography
GoldenPath hg19 (UCSC)ZCCHC14  -     chr16:87439852-87525460 -  16q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZCCHC14  -     16q24.2   [Description]    (hg38-Dec_2013)
EnsemblZCCHC14 - 16q24.2 [CytoView hg19]  ZCCHC14 - 16q24.2 [CytoView hg38]
Mapping of homologs : NCBIZCCHC14 [Mapview hg19]  ZCCHC14 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB011151 AB030243 AK289682 AL117532 BC028304
RefSeq transcript (Entrez)NM_015144
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)ZCCHC14
Cluster EST : UnigeneHs.156231 [ NCBI ]
CGAP (NCI)Hs.156231
Alternative Splicing GalleryENSG00000140948
Gene ExpressionZCCHC14 [ NCBI-GEO ]   ZCCHC14 [ EBI - ARRAY_EXPRESS ]   ZCCHC14 [ SEEK ]   ZCCHC14 [ MEM ]
Gene Expression Viewer (FireBrowse)ZCCHC14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23174
GTEX Portal (Tissue expression)ZCCHC14
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WYQ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WYQ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WYQ9
Splice isoforms : SwissVarQ8WYQ9
PhosPhoSitePlusQ8WYQ9
Domaine pattern : Prosite (Expaxy)ZF_CCHC (PS50158)   
Domains : Interpro (EBI)Phox    SAM/pointed    SAM_type1    Znf_CCHC   
Domain families : Pfam (Sanger)SAM_1 (PF00536)    zf-CCHC (PF00098)   
Domain families : Pfam (NCBI)pfam00536    pfam00098   
Domain families : Smart (EMBL)ZnF_C2HC (SM00343)  
Conserved Domain (NCBI)ZCCHC14
DMDM Disease mutations23174
Blocks (Seattle)ZCCHC14
SuperfamilyQ8WYQ9
Human Protein AtlasENSG00000140948
Peptide AtlasQ8WYQ9
HPRD18316
IPIIPI00103772   IPI00604400   
Protein Interaction databases
DIP (DOE-UCLA)Q8WYQ9
IntAct (EBI)Q8WYQ9
FunCoupENSG00000140948
BioGRIDZCCHC14
STRING (EMBL)ZCCHC14
ZODIACZCCHC14
Ontologies - Pathways
QuickGOQ8WYQ9
Ontology : AmiGOnucleic acid binding  zinc ion binding  phosphatidylinositol binding  
Ontology : EGO-EBInucleic acid binding  zinc ion binding  phosphatidylinositol binding  
NDEx NetworkZCCHC14
Atlas of Cancer Signalling NetworkZCCHC14
Wikipedia pathwaysZCCHC14
Orthology - Evolution
OrthoDB23174
GeneTree (enSembl)ENSG00000140948
Phylogenetic Trees/Animal Genes : TreeFamZCCHC14
HOVERGENQ8WYQ9
HOGENOMQ8WYQ9
Homologs : HomoloGeneZCCHC14
Homology/Alignments : Family Browser (UCSC)ZCCHC14
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZCCHC14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZCCHC14
dbVarZCCHC14
ClinVarZCCHC14
1000_GenomesZCCHC14 
Exome Variant ServerZCCHC14
ExAC (Exome Aggregation Consortium)ZCCHC14 (select the gene name)
Genetic variants : HAPMAP23174
Genomic Variants (DGV)ZCCHC14 [DGVbeta]
DECIPHER (Syndromes)16:87439852-87525460  ENSG00000140948
CONAN: Copy Number AnalysisZCCHC14 
Mutations
ICGC Data PortalZCCHC14 
TCGA Data PortalZCCHC14 
Broad Tumor PortalZCCHC14
OASIS PortalZCCHC14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZCCHC14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZCCHC14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZCCHC14
DgiDB (Drug Gene Interaction Database)ZCCHC14
DoCM (Curated mutations)ZCCHC14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZCCHC14 (select a term)
intoGenZCCHC14
Cancer3DZCCHC14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZCCHC14
Genetic Testing Registry ZCCHC14
NextProtQ8WYQ9 [Medical]
TSGene23174
GENETestsZCCHC14
Huge Navigator ZCCHC14 [HugePedia]
snp3D : Map Gene to Disease23174
BioCentury BCIQZCCHC14
ClinGenZCCHC14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23174
Chemical/Pharm GKB GenePA134895795
Clinical trialZCCHC14
Miscellaneous
canSAR (ICR)ZCCHC14 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZCCHC14
EVEXZCCHC14
GoPubMedZCCHC14
iHOPZCCHC14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:52:12 CET 2017

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