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ZCCHC16 (zinc finger, CCHC domain containing 16)

Identity

Alias_symbol (synonym)Mart4
Mar4
FLJ46608
Other alias
HGNC (Hugo) ZCCHC16
LocusID (NCBI) 340595
Atlas_Id 75892
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 111326253 and ends at 111700473 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZCCHC16   25214
Cards
Entrez_Gene (NCBI)ZCCHC16  340595  zinc finger, CCHC domain containing 16
AliasesMar4; Mart4
GeneCards (Weizmann)ZCCHC16
Ensembl hg19 (Hinxton)ENSG00000187823 [Gene_View]  chrX:111326253-111700473 [Contig_View]  ZCCHC16 [Vega]
Ensembl hg38 (Hinxton)ENSG00000187823 [Gene_View]  chrX:111326253-111700473 [Contig_View]  ZCCHC16 [Vega]
ICGC DataPortalENSG00000187823
TCGA cBioPortalZCCHC16
AceView (NCBI)ZCCHC16
Genatlas (Paris)ZCCHC16
WikiGenes340595
SOURCE (Princeton)ZCCHC16
Genetics Home Reference (NIH)ZCCHC16
Genomic and cartography
GoldenPath hg19 (UCSC)ZCCHC16  -     chrX:111326253-111700473 +  Xq23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZCCHC16  -     Xq23   [Description]    (hg38-Dec_2013)
EnsemblZCCHC16 - Xq23 [CytoView hg19]  ZCCHC16 - Xq23 [CytoView hg38]
Mapping of homologs : NCBIZCCHC16 [Mapview hg19]  ZCCHC16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128465 BC137430 BC137433
RefSeq transcript (Entrez)NM_001004308
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011651 NW_004929444
Consensus coding sequences : CCDS (NCBI)ZCCHC16
Cluster EST : UnigeneHs.368140 [ NCBI ]
CGAP (NCI)Hs.368140
Alternative Splicing GalleryENSG00000187823
Gene ExpressionZCCHC16 [ NCBI-GEO ]   ZCCHC16 [ EBI - ARRAY_EXPRESS ]   ZCCHC16 [ SEEK ]   ZCCHC16 [ MEM ]
Gene Expression Viewer (FireBrowse)ZCCHC16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340595
GTEX Portal (Tissue expression)ZCCHC16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZR62   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZR62  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZR62
Splice isoforms : SwissVarQ6ZR62
PhosPhoSitePlusQ6ZR62
Domaine pattern : Prosite (Expaxy)ZF_CCHC (PS50158)   
Domains : Interpro (EBI)Znf_CCHC   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2HC (SM00343)  
Conserved Domain (NCBI)ZCCHC16
DMDM Disease mutations340595
Blocks (Seattle)ZCCHC16
SuperfamilyQ6ZR62
Human Protein AtlasENSG00000187823
Peptide AtlasQ6ZR62
HPRD17003
IPIIPI00418727   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZR62
IntAct (EBI)Q6ZR62
FunCoupENSG00000187823
BioGRIDZCCHC16
STRING (EMBL)ZCCHC16
ZODIACZCCHC16
Ontologies - Pathways
QuickGOQ6ZR62
Ontology : AmiGOnucleic acid binding  zinc ion binding  
Ontology : EGO-EBInucleic acid binding  zinc ion binding  
NDEx NetworkZCCHC16
Atlas of Cancer Signalling NetworkZCCHC16
Wikipedia pathwaysZCCHC16
Orthology - Evolution
OrthoDB340595
GeneTree (enSembl)ENSG00000187823
Phylogenetic Trees/Animal Genes : TreeFamZCCHC16
HOVERGENQ6ZR62
HOGENOMQ6ZR62
Homologs : HomoloGeneZCCHC16
Homology/Alignments : Family Browser (UCSC)ZCCHC16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZCCHC16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZCCHC16
dbVarZCCHC16
ClinVarZCCHC16
1000_GenomesZCCHC16 
Exome Variant ServerZCCHC16
ExAC (Exome Aggregation Consortium)ZCCHC16 (select the gene name)
Genetic variants : HAPMAP340595
Genomic Variants (DGV)ZCCHC16 [DGVbeta]
DECIPHER (Syndromes)X:111326253-111700473  ENSG00000187823
CONAN: Copy Number AnalysisZCCHC16 
Mutations
ICGC Data PortalZCCHC16 
TCGA Data PortalZCCHC16 
Broad Tumor PortalZCCHC16
OASIS PortalZCCHC16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZCCHC16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZCCHC16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZCCHC16
DgiDB (Drug Gene Interaction Database)ZCCHC16
DoCM (Curated mutations)ZCCHC16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZCCHC16 (select a term)
intoGenZCCHC16
Cancer3DZCCHC16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZCCHC16
Genetic Testing Registry ZCCHC16
NextProtQ6ZR62 [Medical]
TSGene340595
GENETestsZCCHC16
Huge Navigator ZCCHC16 [HugePedia]
snp3D : Map Gene to Disease340595
BioCentury BCIQZCCHC16
ClinGenZCCHC16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340595
Chemical/Pharm GKB GenePA142670538
Clinical trialZCCHC16
Miscellaneous
canSAR (ICR)ZCCHC16 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZCCHC16
EVEXZCCHC16
GoPubMedZCCHC16
iHOPZCCHC16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:52:12 CET 2017

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