Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZCCHC17 (zinc finger CCHC-type containing 17)

Identity

Alias_symbol (synonym)PS1D
HSPC251
pNO40
Other alias
HGNC (Hugo) ZCCHC17
LocusID (NCBI) 51538
Atlas_Id 54794
Location 1p35.2  [Link to chromosome band 1p35]
Location_base_pair Starts at 31296982 and ends at 31364953 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM98A (2p22.3) / ZCCHC17 (1p35.2)SERINC2 (1p35.2) / ZCCHC17 (1p35.2)TTC1 (5q33.3) / ZCCHC17 (1p35.2)
ZCCHC17 (1p35.2) / FABP3 (1p35.2)ZCCHC17 (1p35.2) / KIAA0226L (13q14.13)ZCCHC17 (1p35.2) / SERINC2 (1p35.2)
ZCCHC17 (1p35.2) / TPK1 (7q35)ZCCHC17 (1p35.2) / ZCCHC17 (1p35.2)SERINC2 1p35.2 / ZCCHC17 1p35.2
ZCCHC17 1p35.2 / FABP3 1p35.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Small Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)ZCCHC17   30246
Cards
Entrez_Gene (NCBI)ZCCHC17  51538  zinc finger CCHC-type containing 17
AliasesHSPC251; PS1D; pNO40
GeneCards (Weizmann)ZCCHC17
Ensembl hg19 (Hinxton)ENSG00000121766 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121766 [Gene_View]  chr1:31296982-31364953 [Contig_View]  ZCCHC17 [Vega]
ICGC DataPortalENSG00000121766
TCGA cBioPortalZCCHC17
AceView (NCBI)ZCCHC17
Genatlas (Paris)ZCCHC17
WikiGenes51538
SOURCE (Princeton)ZCCHC17
Genetics Home Reference (NIH)ZCCHC17
Genomic and cartography
GoldenPath hg38 (UCSC)ZCCHC17  -     chr1:31296982-31364953 +  1p35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZCCHC17  -     1p35.2   [Description]    (hg19-Feb_2009)
EnsemblZCCHC17 - 1p35.2 [CytoView hg19]  ZCCHC17 - 1p35.2 [CytoView hg38]
Mapping of homologs : NCBIZCCHC17 [Mapview hg19]  ZCCHC17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151077 AF151085 AF247661 AK001929 AK022506
RefSeq transcript (Entrez)NM_001282566 NM_001282567 NM_001282568 NM_001282569 NM_001282570 NM_001282571 NM_001282572 NM_001282573 NM_001282574 NM_016505
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZCCHC17
Cluster EST : UnigeneHs.524094 [ NCBI ]
CGAP (NCI)Hs.524094
Alternative Splicing GalleryENSG00000121766
Gene ExpressionZCCHC17 [ NCBI-GEO ]   ZCCHC17 [ EBI - ARRAY_EXPRESS ]   ZCCHC17 [ SEEK ]   ZCCHC17 [ MEM ]
Gene Expression Viewer (FireBrowse)ZCCHC17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51538
GTEX Portal (Tissue expression)ZCCHC17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NP64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NP64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NP64
Splice isoforms : SwissVarQ9NP64
PhosPhoSitePlusQ9NP64
Domaine pattern : Prosite (Expaxy)S1 (PS50126)    ZF_CCHC (PS50158)   
Domains : Interpro (EBI)NA-bd_OB-fold    S1_dom    S1_domain    Znf_CCHC   
Domain families : Pfam (Sanger)S1 (PF00575)   
Domain families : Pfam (NCBI)pfam00575   
Domain families : Smart (EMBL)S1 (SM00316)  
Conserved Domain (NCBI)ZCCHC17
DMDM Disease mutations51538
Blocks (Seattle)ZCCHC17
PDB (SRS)2CQO   
PDB (PDBSum)2CQO   
PDB (IMB)2CQO   
PDB (RSDB)2CQO   
Structural Biology KnowledgeBase2CQO   
SCOP (Structural Classification of Proteins)2CQO   
CATH (Classification of proteins structures)2CQO   
SuperfamilyQ9NP64
Human Protein AtlasENSG00000121766
Peptide AtlasQ9NP64
HPRD15189
IPIIPI00099810   IPI00383254   IPI00908461   
Protein Interaction databases
DIP (DOE-UCLA)Q9NP64
IntAct (EBI)Q9NP64
FunCoupENSG00000121766
BioGRIDZCCHC17
STRING (EMBL)ZCCHC17
ZODIACZCCHC17
Ontologies - Pathways
QuickGOQ9NP64
Ontology : AmiGORNA binding  protein binding  nucleolus  zinc ion binding  intracellular ribonucleoprotein complex  
Ontology : EGO-EBIRNA binding  protein binding  nucleolus  zinc ion binding  intracellular ribonucleoprotein complex  
NDEx NetworkZCCHC17
Atlas of Cancer Signalling NetworkZCCHC17
Wikipedia pathwaysZCCHC17
Orthology - Evolution
OrthoDB51538
GeneTree (enSembl)ENSG00000121766
Phylogenetic Trees/Animal Genes : TreeFamZCCHC17
HOVERGENQ9NP64
HOGENOMQ9NP64
Homologs : HomoloGeneZCCHC17
Homology/Alignments : Family Browser (UCSC)ZCCHC17
Gene fusions - Rearrangements
Fusion : MitelmanSERINC2/ZCCHC17 [1p35.2/1p35.2]  [t(1;1)(p35;p35)]  
Fusion : MitelmanZCCHC17/FABP3 [1p35.2/1p35.2]  [t(1;1)(p35;p35)]  
Fusion: TCGASERINC2 1p35.2 ZCCHC17 1p35.2 LUSC
Fusion: TCGAZCCHC17 1p35.2 FABP3 1p35.2 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZCCHC17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZCCHC17
dbVarZCCHC17
ClinVarZCCHC17
1000_GenomesZCCHC17 
Exome Variant ServerZCCHC17
ExAC (Exome Aggregation Consortium)ZCCHC17 (select the gene name)
Genetic variants : HAPMAP51538
Genomic Variants (DGV)ZCCHC17 [DGVbeta]
DECIPHERZCCHC17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZCCHC17 
Mutations
ICGC Data PortalZCCHC17 
TCGA Data PortalZCCHC17 
Broad Tumor PortalZCCHC17
OASIS PortalZCCHC17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZCCHC17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZCCHC17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZCCHC17
DgiDB (Drug Gene Interaction Database)ZCCHC17
DoCM (Curated mutations)ZCCHC17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZCCHC17 (select a term)
intoGenZCCHC17
Cancer3DZCCHC17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZCCHC17
Genetic Testing Registry ZCCHC17
NextProtQ9NP64 [Medical]
TSGene51538
GENETestsZCCHC17
Target ValidationZCCHC17
Huge Navigator ZCCHC17 [HugePedia]
snp3D : Map Gene to Disease51538
BioCentury BCIQZCCHC17
ClinGenZCCHC17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51538
Chemical/Pharm GKB GenePA142670539
Clinical trialZCCHC17
Miscellaneous
canSAR (ICR)ZCCHC17 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZCCHC17
EVEXZCCHC17
GoPubMedZCCHC17
iHOPZCCHC17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:38:49 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.