Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZCCHC18 (zinc finger CCHC-type containing 18)

Identity

Alias_nameszinc finger, CCHC domain containing 12 pseudogene 1
Alias_symbol (synonym)SIZN2
PNMA7B
Other alias
HGNC (Hugo) ZCCHC18
LocusID (NCBI) 644353
Atlas_Id 75893
Location Xq22.2  [Link to chromosome band Xq22]
Location_base_pair Starts at 104112526 and ends at 104115847 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZCCHC18   32459
Cards
Entrez_Gene (NCBI)ZCCHC18  644353  zinc finger CCHC-type containing 18
AliasesPNMA7B; SIZN2
GeneCards (Weizmann)ZCCHC18
Ensembl hg19 (Hinxton)ENSG00000166707 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166707 [Gene_View]  chrX:104112526-104115847 [Contig_View]  ZCCHC18 [Vega]
ICGC DataPortalENSG00000166707
TCGA cBioPortalZCCHC18
AceView (NCBI)ZCCHC18
Genatlas (Paris)ZCCHC18
WikiGenes644353
SOURCE (Princeton)ZCCHC18
Genetics Home Reference (NIH)ZCCHC18
Genomic and cartography
GoldenPath hg38 (UCSC)ZCCHC18  -     chrX:104112526-104115847 +  Xq22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZCCHC18  -     Xq22.2   [Description]    (hg19-Feb_2009)
EnsemblZCCHC18 - Xq22.2 [CytoView hg19]  ZCCHC18 - Xq22.2 [CytoView hg38]
Mapping of homologs : NCBIZCCHC18 [Mapview hg19]  ZCCHC18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086548 AI656548 CN272796 DA166381 DA503483
RefSeq transcript (Entrez)NM_001143978
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZCCHC18
Cluster EST : UnigeneHs.648338 [ NCBI ]
CGAP (NCI)Hs.648338
Alternative Splicing GalleryENSG00000166707
Gene ExpressionZCCHC18 [ NCBI-GEO ]   ZCCHC18 [ EBI - ARRAY_EXPRESS ]   ZCCHC18 [ SEEK ]   ZCCHC18 [ MEM ]
Gene Expression Viewer (FireBrowse)ZCCHC18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644353
GTEX Portal (Tissue expression)ZCCHC18
Human Protein AtlasENSG00000166707-ZCCHC18 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CG32   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CG32  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CG32
Splice isoforms : SwissVarP0CG32
PhosPhoSitePlusP0CG32
Domains : Interpro (EBI)PNMA    Znf_CCHC   
Domain families : Pfam (Sanger)PNMA (PF14893)   
Domain families : Pfam (NCBI)pfam14893   
Conserved Domain (NCBI)ZCCHC18
DMDM Disease mutations644353
Blocks (Seattle)ZCCHC18
SuperfamilyP0CG32
Human Protein Atlas [tissue]ENSG00000166707-ZCCHC18 [tissue]
Peptide AtlasP0CG32
IPIIPI00902565   
Protein Interaction databases
DIP (DOE-UCLA)P0CG32
IntAct (EBI)P0CG32
FunCoupENSG00000166707
BioGRIDZCCHC18
STRING (EMBL)ZCCHC18
ZODIACZCCHC18
Ontologies - Pathways
QuickGOP0CG32
Ontology : AmiGOnucleic acid binding  zinc ion binding  nuclear speck  ligand-dependent nuclear receptor transcription coactivator activity  BMP signaling pathway  
Ontology : EGO-EBInucleic acid binding  zinc ion binding  nuclear speck  ligand-dependent nuclear receptor transcription coactivator activity  BMP signaling pathway  
NDEx NetworkZCCHC18
Atlas of Cancer Signalling NetworkZCCHC18
Wikipedia pathwaysZCCHC18
Orthology - Evolution
OrthoDB644353
GeneTree (enSembl)ENSG00000166707
Phylogenetic Trees/Animal Genes : TreeFamZCCHC18
HOVERGENP0CG32
HOGENOMP0CG32
Homologs : HomoloGeneZCCHC18
Homology/Alignments : Family Browser (UCSC)ZCCHC18
Gene fusions - Rearrangements
Fusion: Tumor Portal ZCCHC18
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZCCHC18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZCCHC18
dbVarZCCHC18
ClinVarZCCHC18
1000_GenomesZCCHC18 
Exome Variant ServerZCCHC18
ExAC (Exome Aggregation Consortium)ENSG00000166707
GNOMAD BrowserENSG00000166707
Genetic variants : HAPMAP644353
Genomic Variants (DGV)ZCCHC18 [DGVbeta]
DECIPHERZCCHC18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZCCHC18 
Mutations
ICGC Data PortalZCCHC18 
TCGA Data PortalZCCHC18 
Broad Tumor PortalZCCHC18
OASIS PortalZCCHC18 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZCCHC18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZCCHC18
DgiDB (Drug Gene Interaction Database)ZCCHC18
DoCM (Curated mutations)ZCCHC18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZCCHC18 (select a term)
intoGenZCCHC18
Cancer3DZCCHC18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZCCHC18
Genetic Testing Registry ZCCHC18
NextProtP0CG32 [Medical]
TSGene644353
GENETestsZCCHC18
Target ValidationZCCHC18
Huge Navigator ZCCHC18 [HugePedia]
snp3D : Map Gene to Disease644353
BioCentury BCIQZCCHC18
ClinGenZCCHC18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644353
Chemical/Pharm GKB GenePA162409569
Clinical trialZCCHC18
Miscellaneous
canSAR (ICR)ZCCHC18 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZCCHC18
EVEXZCCHC18
GoPubMedZCCHC18
iHOPZCCHC18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:36:19 CET 2017

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