Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZCCHC2 (zinc finger CCHC-type containing 2)

Identity

Alias_namesC18orf49
chromosome 18 open reading frame 49
Alias_symbol (synonym)FLJ20281
KIAA1744
FLJ20222
Other alias
HGNC (Hugo) ZCCHC2
LocusID (NCBI) 54877
Atlas_Id 42864
Location 18q21.33  [Link to chromosome band 18q21]
Location_base_pair Starts at 60190658 and ends at 60245818 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LOC100507463 () / ZCCHC2 (18q21.33)ZCCHC2 (18q21.33) / KIAA1468 (18q21.33)ZCCHC2 (18q21.33) / SLC25A14 (Xq26.1)
ZCCHC2 (18q21.33) / ZCCHC2 (18q21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZCCHC2   22916
Cards
Entrez_Gene (NCBI)ZCCHC2  54877  zinc finger CCHC-type containing 2
AliasesC18orf49
GeneCards (Weizmann)ZCCHC2
Ensembl hg19 (Hinxton)ENSG00000141664 [Gene_View]  chr18:60190658-60245818 [Contig_View]  ZCCHC2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000141664 [Gene_View]  chr18:60190658-60245818 [Contig_View]  ZCCHC2 [Vega]
ICGC DataPortalENSG00000141664
TCGA cBioPortalZCCHC2
AceView (NCBI)ZCCHC2
Genatlas (Paris)ZCCHC2
WikiGenes54877
SOURCE (Princeton)ZCCHC2
Genetics Home Reference (NIH)ZCCHC2
Genomic and cartography
GoldenPath hg19 (UCSC)ZCCHC2  -     chr18:60190658-60245818 +  18q21.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZCCHC2  -     18q21.33   [Description]    (hg38-Dec_2013)
EnsemblZCCHC2 - 18q21.33 [CytoView hg19]  ZCCHC2 - 18q21.33 [CytoView hg38]
Mapping of homologs : NCBIZCCHC2 [Mapview hg19]  ZCCHC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA406111 AA903206 AB051531 AK000229 AK000288
RefSeq transcript (Entrez)NM_017742
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010966 NW_004929411
Consensus coding sequences : CCDS (NCBI)ZCCHC2
Cluster EST : UnigeneHs.733355 [ NCBI ]
CGAP (NCI)Hs.733355
Alternative Splicing GalleryENSG00000141664
Gene ExpressionZCCHC2 [ NCBI-GEO ]   ZCCHC2 [ EBI - ARRAY_EXPRESS ]   ZCCHC2 [ SEEK ]   ZCCHC2 [ MEM ]
Gene Expression Viewer (FireBrowse)ZCCHC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54877
GTEX Portal (Tissue expression)ZCCHC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0B9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0B9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0B9
Splice isoforms : SwissVarQ9C0B9
PhosPhoSitePlusQ9C0B9
Domaine pattern : Prosite (Expaxy)ZF_CCHC (PS50158)   
Domains : Interpro (EBI)Phox    Znf_CCHC   
Domain families : Pfam (Sanger)zf-CCHC (PF00098)   
Domain families : Pfam (NCBI)pfam00098   
Domain families : Smart (EMBL)ZnF_C2HC (SM00343)  
Conserved Domain (NCBI)ZCCHC2
DMDM Disease mutations54877
Blocks (Seattle)ZCCHC2
SuperfamilyQ9C0B9
Human Protein AtlasENSG00000141664
Peptide AtlasQ9C0B9
HPRD11696
IPIIPI00337766   IPI00386611   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0B9
IntAct (EBI)Q9C0B9
FunCoupENSG00000141664
BioGRIDZCCHC2
STRING (EMBL)ZCCHC2
ZODIACZCCHC2
Ontologies - Pathways
QuickGOQ9C0B9
Ontology : AmiGOnucleic acid binding  cytoplasm  zinc ion binding  phosphatidylinositol binding  
Ontology : EGO-EBInucleic acid binding  cytoplasm  zinc ion binding  phosphatidylinositol binding  
NDEx NetworkZCCHC2
Atlas of Cancer Signalling NetworkZCCHC2
Wikipedia pathwaysZCCHC2
Orthology - Evolution
OrthoDB54877
GeneTree (enSembl)ENSG00000141664
Phylogenetic Trees/Animal Genes : TreeFamZCCHC2
HOVERGENQ9C0B9
HOGENOMQ9C0B9
Homologs : HomoloGeneZCCHC2
Homology/Alignments : Family Browser (UCSC)ZCCHC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZCCHC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZCCHC2
dbVarZCCHC2
ClinVarZCCHC2
1000_GenomesZCCHC2 
Exome Variant ServerZCCHC2
ExAC (Exome Aggregation Consortium)ZCCHC2 (select the gene name)
Genetic variants : HAPMAP54877
Genomic Variants (DGV)ZCCHC2 [DGVbeta]
DECIPHER (Syndromes)18:60190658-60245818  ENSG00000141664
CONAN: Copy Number AnalysisZCCHC2 
Mutations
ICGC Data PortalZCCHC2 
TCGA Data PortalZCCHC2 
Broad Tumor PortalZCCHC2
OASIS PortalZCCHC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZCCHC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZCCHC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZCCHC2
DgiDB (Drug Gene Interaction Database)ZCCHC2
DoCM (Curated mutations)ZCCHC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZCCHC2 (select a term)
intoGenZCCHC2
Cancer3DZCCHC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZCCHC2
Genetic Testing Registry ZCCHC2
NextProtQ9C0B9 [Medical]
TSGene54877
GENETestsZCCHC2
Huge Navigator ZCCHC2 [HugePedia]
snp3D : Map Gene to Disease54877
BioCentury BCIQZCCHC2
ClinGenZCCHC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54877
Chemical/Pharm GKB GenePA134861180
Clinical trialZCCHC2
Miscellaneous
canSAR (ICR)ZCCHC2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZCCHC2
EVEXZCCHC2
GoPubMedZCCHC2
iHOPZCCHC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:25:27 CEST 2017

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