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ZCCHC23 (zinc finger CCHC-type containing 23)

Identity

Alias_symbol (synonym)FLJ45231
Other alias-
HGNC (Hugo) ZCCHC23
LocusID (NCBI) 645078
Atlas_Id 75894
Location 4q25  [Link to chromosome band 4q25]
Location_base_pair Starts at 109303035 and ends at 109316135 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZCCHC23   32963
Cards
Entrez_Gene (NCBI)ZCCHC23  645078  zinc finger CCHC-type containing 23
Aliases
GeneCards (Weizmann)ZCCHC23
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:109303035-109316135 [Contig_View]  ZCCHC23 [Vega]
TCGA cBioPortalZCCHC23
AceView (NCBI)ZCCHC23
Genatlas (Paris)ZCCHC23
WikiGenes645078
SOURCE (Princeton)ZCCHC23
Genetics Home Reference (NIH)ZCCHC23
Genomic and cartography
GoldenPath hg38 (UCSC)ZCCHC23  -     chr4:109303035-109316135 +  4q25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZCCHC23  -     4q25   [Description]    (hg19-Feb_2009)
EnsemblZCCHC23 - 4q25 [CytoView hg19]  ZCCHC23 - 4q25 [CytoView hg38]
Mapping of homologs : NCBIZCCHC23 [Mapview hg19]  ZCCHC23 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127166
RefSeq transcript (Entrez)NM_001039778
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZCCHC23
Cluster EST : UnigeneHs.518784 [ NCBI ]
CGAP (NCI)Hs.518784
Gene ExpressionZCCHC23 [ NCBI-GEO ]   ZCCHC23 [ EBI - ARRAY_EXPRESS ]   ZCCHC23 [ SEEK ]   ZCCHC23 [ MEM ]
Gene Expression Viewer (FireBrowse)ZCCHC23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645078
GTEX Portal (Tissue expression)ZCCHC23
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZST2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZST2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZST2
Splice isoforms : SwissVarQ6ZST2
PhosPhoSitePlusQ6ZST2
Domaine pattern : Prosite (Expaxy)ZF_CCHC (PS50158)   
Domains : Interpro (EBI)Znf_CCHC   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZCCHC23
DMDM Disease mutations645078
Blocks (Seattle)ZCCHC23
SuperfamilyQ6ZST2
Peptide AtlasQ6ZST2
IPIIPI00444701   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZST2
IntAct (EBI)Q6ZST2
BioGRIDZCCHC23
STRING (EMBL)ZCCHC23
ZODIACZCCHC23
Ontologies - Pathways
QuickGOQ6ZST2
Ontology : AmiGOnucleic acid binding  zinc ion binding  
Ontology : EGO-EBInucleic acid binding  zinc ion binding  
NDEx NetworkZCCHC23
Atlas of Cancer Signalling NetworkZCCHC23
Wikipedia pathwaysZCCHC23
Orthology - Evolution
OrthoDB645078
Phylogenetic Trees/Animal Genes : TreeFamZCCHC23
HOVERGENQ6ZST2
HOGENOMQ6ZST2
Homologs : HomoloGeneZCCHC23
Homology/Alignments : Family Browser (UCSC)ZCCHC23
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZCCHC23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZCCHC23
dbVarZCCHC23
ClinVarZCCHC23
1000_GenomesZCCHC23 
Exome Variant ServerZCCHC23
ExAC (Exome Aggregation Consortium)ZCCHC23 (select the gene name)
Genetic variants : HAPMAP645078
Genomic Variants (DGV)ZCCHC23 [DGVbeta]
DECIPHERZCCHC23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZCCHC23 
Mutations
ICGC Data PortalZCCHC23 
TCGA Data PortalZCCHC23 
Broad Tumor PortalZCCHC23
OASIS PortalZCCHC23 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZCCHC23
BioMutasearch ZCCHC23
DgiDB (Drug Gene Interaction Database)ZCCHC23
DoCM (Curated mutations)ZCCHC23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZCCHC23 (select a term)
intoGenZCCHC23
Cancer3DZCCHC23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZCCHC23
Genetic Testing Registry ZCCHC23
NextProtQ6ZST2 [Medical]
TSGene645078
GENETestsZCCHC23
Target ValidationZCCHC23
Huge Navigator ZCCHC23 [HugePedia]
snp3D : Map Gene to Disease645078
BioCentury BCIQZCCHC23
ClinGenZCCHC23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645078
Chemical/Pharm GKB GenePA147357110
Clinical trialZCCHC23
Miscellaneous
canSAR (ICR)ZCCHC23 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineZCCHC23
EVEXZCCHC23
GoPubMedZCCHC23
iHOPZCCHC23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:44:11 CEST 2017

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