Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZCCHC24 (zinc finger, CCHC domain containing 24)

Identity

Alias_namesC10orf56
chromosome 10 open reading frame 56
Alias_symbol (synonym)FLJ90798
Z3CXXC8
Other alias
HGNC (Hugo) ZCCHC24
LocusID (NCBI) 219654
Atlas_Id 75895
Location 10q22.3  [Link to chromosome band 10q22]
Location_base_pair Starts at 81142083 and ends at 81205383 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ACOT7 (1p36.31) / ZCCHC24 (10q22.3)IMPAD1 (8q12.1) / ZCCHC24 (10q22.3)SUFU (10q24.32) / ZCCHC24 (10q22.3)
IMPAD1 ZCCHC24SUFU ZCCHC24

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZCCHC24   26911
Cards
Entrez_Gene (NCBI)ZCCHC24  219654  zinc finger, CCHC domain containing 24
AliasesC10orf56; Z3CXXC8
GeneCards (Weizmann)ZCCHC24
Ensembl hg19 (Hinxton)ENSG00000165424 [Gene_View]  chr10:81142083-81205383 [Contig_View]  ZCCHC24 [Vega]
Ensembl hg38 (Hinxton)ENSG00000165424 [Gene_View]  chr10:81142083-81205383 [Contig_View]  ZCCHC24 [Vega]
ICGC DataPortalENSG00000165424
TCGA cBioPortalZCCHC24
AceView (NCBI)ZCCHC24
Genatlas (Paris)ZCCHC24
WikiGenes219654
SOURCE (Princeton)ZCCHC24
Genetics Home Reference (NIH)ZCCHC24
Genomic and cartography
GoldenPath hg19 (UCSC)ZCCHC24  -     chr10:81142083-81205383 -  10q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZCCHC24  -     10q22.3   [Description]    (hg38-Dec_2013)
EnsemblZCCHC24 - 10q22.3 [CytoView hg19]  ZCCHC24 - 10q22.3 [CytoView hg38]
Mapping of homologs : NCBIZCCHC24 [Mapview hg19]  ZCCHC24 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024784 AK075279 AK293361 AK303734 AK308876
RefSeq transcript (Entrez)NM_153367
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)ZCCHC24
Cluster EST : UnigeneHs.523080 [ NCBI ]
CGAP (NCI)Hs.523080
Alternative Splicing GalleryENSG00000165424
Gene ExpressionZCCHC24 [ NCBI-GEO ]   ZCCHC24 [ EBI - ARRAY_EXPRESS ]   ZCCHC24 [ SEEK ]   ZCCHC24 [ MEM ]
Gene Expression Viewer (FireBrowse)ZCCHC24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219654
GTEX Portal (Tissue expression)ZCCHC24
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N2G6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N2G6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N2G6
Splice isoforms : SwissVarQ8N2G6
PhosPhoSitePlusQ8N2G6
Domaine pattern : Prosite (Expaxy)ZF_CCHC (PS50158)   
Domains : Interpro (EBI)Zn_knuckle_CX2CX3GHX4C    Znf-3CxxC    Znf_CCHC   
Domain families : Pfam (Sanger)zf-3CxxC (PF13695)    zf-CCHC_2 (PF13696)   
Domain families : Pfam (NCBI)pfam13695    pfam13696   
Domain families : Smart (EMBL)ZnF_C2HC (SM00343)  
Conserved Domain (NCBI)ZCCHC24
DMDM Disease mutations219654
Blocks (Seattle)ZCCHC24
SuperfamilyQ8N2G6
Human Protein AtlasENSG00000165424
Peptide AtlasQ8N2G6
HPRD08299
IPIIPI00296153   IPI00479689   
Protein Interaction databases
DIP (DOE-UCLA)Q8N2G6
IntAct (EBI)Q8N2G6
FunCoupENSG00000165424
BioGRIDZCCHC24
STRING (EMBL)ZCCHC24
ZODIACZCCHC24
Ontologies - Pathways
QuickGOQ8N2G6
Ontology : AmiGOzinc ion binding  poly(A) RNA binding  
Ontology : EGO-EBIzinc ion binding  poly(A) RNA binding  
NDEx NetworkZCCHC24
Atlas of Cancer Signalling NetworkZCCHC24
Wikipedia pathwaysZCCHC24
Orthology - Evolution
OrthoDB219654
GeneTree (enSembl)ENSG00000165424
Phylogenetic Trees/Animal Genes : TreeFamZCCHC24
HOVERGENQ8N2G6
HOGENOMQ8N2G6
Homologs : HomoloGeneZCCHC24
Homology/Alignments : Family Browser (UCSC)ZCCHC24
Gene fusions - Rearrangements
Fusion: TCGAIMPAD1 ZCCHC24
Fusion: TCGASUFU ZCCHC24
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZCCHC24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZCCHC24
dbVarZCCHC24
ClinVarZCCHC24
1000_GenomesZCCHC24 
Exome Variant ServerZCCHC24
ExAC (Exome Aggregation Consortium)ZCCHC24 (select the gene name)
Genetic variants : HAPMAP219654
Genomic Variants (DGV)ZCCHC24 [DGVbeta]
DECIPHER (Syndromes)10:81142083-81205383  ENSG00000165424
CONAN: Copy Number AnalysisZCCHC24 
Mutations
ICGC Data PortalZCCHC24 
TCGA Data PortalZCCHC24 
Broad Tumor PortalZCCHC24
OASIS PortalZCCHC24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZCCHC24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZCCHC24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZCCHC24
DgiDB (Drug Gene Interaction Database)ZCCHC24
DoCM (Curated mutations)ZCCHC24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZCCHC24 (select a term)
intoGenZCCHC24
Cancer3DZCCHC24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZCCHC24
Genetic Testing Registry ZCCHC24
NextProtQ8N2G6 [Medical]
TSGene219654
GENETestsZCCHC24
Huge Navigator ZCCHC24 [HugePedia]
snp3D : Map Gene to Disease219654
BioCentury BCIQZCCHC24
ClinGenZCCHC24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219654
Chemical/Pharm GKB GenePA162409573
Clinical trialZCCHC24
Miscellaneous
canSAR (ICR)ZCCHC24 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZCCHC24
EVEXZCCHC24
GoPubMedZCCHC24
iHOPZCCHC24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:52:12 CET 2017

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