Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZCCHC24 (zinc finger CCHC-type containing 24)

Identity

Alias (NCBI)C10orf56
Z3CXXC8
HGNC (Hugo) ZCCHC24
HGNC Alias symbFLJ90798
Z3CXXC8
HGNC Alias namezinc finger, 3CxxC-type 8
HGNC Previous nameC10orf56
HGNC Previous namechromosome 10 open reading frame 56
LocusID (NCBI) 219654
Atlas_Id 75895
Location 10q22.3  [Link to chromosome band 10q22]
Location_base_pair Starts at 79382327 and ends at 79445627 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACOT7 (1p36.31) / ZCCHC24 (10q22.3)IMPAD1 (8q12.1) / ZCCHC24 (10q22.3)SUFU (10q24.32) / ZCCHC24 (10q22.3)
IMPAD1 ZCCHC24SUFU ZCCHC24

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(8;10)(q12;q22) IMPAD1/ZCCHC24
t(10;10)(q22;q24) SUFU/ZCCHC24


External links

Nomenclature
HGNC (Hugo)ZCCHC24   26911
Cards
Entrez_Gene (NCBI)ZCCHC24    zinc finger CCHC-type containing 24
AliasesC10orf56; Z3CXXC8
GeneCards (Weizmann)ZCCHC24
Ensembl hg19 (Hinxton)ENSG00000165424 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165424 [Gene_View]  ENSG00000165424 [Sequence]  chr10:79382327-79445627 [Contig_View]  ZCCHC24 [Vega]
ICGC DataPortalENSG00000165424
TCGA cBioPortalZCCHC24
AceView (NCBI)ZCCHC24
Genatlas (Paris)ZCCHC24
SOURCE (Princeton)ZCCHC24
Genetics Home Reference (NIH)ZCCHC24
Genomic and cartography
GoldenPath hg38 (UCSC)ZCCHC24  -     chr10:79382327-79445627 -  10q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZCCHC24  -     10q22.3   [Description]    (hg19-Feb_2009)
GoldenPathZCCHC24 - 10q22.3 [CytoView hg19]  ZCCHC24 - 10q22.3 [CytoView hg38]
ImmunoBaseENSG00000165424
genome Data Viewer NCBIZCCHC24 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK024784 AK075279 AK293361 AK303734 AK308876
RefSeq transcript (Entrez)NM_153367
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZCCHC24
Alternative Splicing GalleryENSG00000165424
Gene ExpressionZCCHC24 [ NCBI-GEO ]   ZCCHC24 [ EBI - ARRAY_EXPRESS ]   ZCCHC24 [ SEEK ]   ZCCHC24 [ MEM ]
Gene Expression Viewer (FireBrowse)ZCCHC24 [ Firebrowse - Broad ]
GenevisibleExpression of ZCCHC24 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219654
GTEX Portal (Tissue expression)ZCCHC24
Human Protein AtlasENSG00000165424-ZCCHC24 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N2G6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N2G6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N2G6
Splice isoforms : SwissVarQ8N2G6
PhosPhoSitePlusQ8N2G6
Domaine pattern : Prosite (Expaxy)ZF_CCHC (PS50158)   
Domains : Interpro (EBI)Zcchc24_Znf-3CxxC    Zn_knuckle_CX2CX3GHX4C    Znf-3CxxC    Znf_CCHC    Znf_CCHC_sf   
Domain families : Pfam (Sanger)zf-3CxxC_2 (PF17180)    zf-CCHC_2 (PF13696)   
Domain families : Pfam (NCBI)pfam17180    pfam13696   
Domain families : Smart (EMBL)zf-3CxxC (SM01328)  
Conserved Domain (NCBI)ZCCHC24
Blocks (Seattle)ZCCHC24
SuperfamilyQ8N2G6
Human Protein Atlas [tissue]ENSG00000165424-ZCCHC24 [tissue]
Peptide AtlasQ8N2G6
HPRD08299
IPIIPI00296153   IPI00479689   
Protein Interaction databases
DIP (DOE-UCLA)Q8N2G6
IntAct (EBI)Q8N2G6
BioGRIDZCCHC24
STRING (EMBL)ZCCHC24
ZODIACZCCHC24
Ontologies - Pathways
QuickGOQ8N2G6
Ontology : AmiGORNA binding  zinc ion binding  
Ontology : EGO-EBIRNA binding  zinc ion binding  
NDEx NetworkZCCHC24
Atlas of Cancer Signalling NetworkZCCHC24
Wikipedia pathwaysZCCHC24
Orthology - Evolution
OrthoDB219654
GeneTree (enSembl)ENSG00000165424
Phylogenetic Trees/Animal Genes : TreeFamZCCHC24
HOGENOMQ8N2G6
Homologs : HomoloGeneZCCHC24
Homology/Alignments : Family Browser (UCSC)ZCCHC24
Gene fusions - Rearrangements
Fusion PortalIMPAD1 ZCCHC24
Fusion PortalSUFU ZCCHC24
Fusion : QuiverZCCHC24
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZCCHC24 [hg38]
dbVarZCCHC24
ClinVarZCCHC24
MonarchZCCHC24
1000_GenomesZCCHC24 
Exome Variant ServerZCCHC24
GNOMAD BrowserENSG00000165424
Varsome BrowserZCCHC24
Genomic Variants (DGV)ZCCHC24 [DGVbeta]
DECIPHERZCCHC24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZCCHC24 
Mutations
ICGC Data PortalZCCHC24 
TCGA Data PortalZCCHC24 
Broad Tumor PortalZCCHC24
OASIS PortalZCCHC24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZCCHC24  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZCCHC24
Mutations and Diseases : HGMDZCCHC24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZCCHC24
DgiDB (Drug Gene Interaction Database)ZCCHC24
DoCM (Curated mutations)ZCCHC24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZCCHC24 (select a term)
intoGenZCCHC24
Cancer3DZCCHC24(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZCCHC24
MedgenZCCHC24
Genetic Testing Registry ZCCHC24
NextProtQ8N2G6 [Medical]
GENETestsZCCHC24
Target ValidationZCCHC24
Huge Navigator ZCCHC24 [HugePedia]
ClinGenZCCHC24
Clinical trials, drugs, therapy
MyCancerGenomeZCCHC24
Protein Interactions : CTD
Pharm GKB GenePA162409573
Clinical trialZCCHC24
Miscellaneous
canSAR (ICR)ZCCHC24 (select the gene name)
HarmonizomeZCCHC24
DataMed IndexZCCHC24
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZCCHC24
EVEXZCCHC24
GoPubMedZCCHC24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:35:18 CET 2020

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