Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZCCHC3 (zinc finger CCHC-type containing 3)

Identity

Alias_namesC20orf99
chromosome 20 open reading frame 99
Alias_symbol (synonym)dJ1103G7.7
Other alias
HGNC (Hugo) ZCCHC3
LocusID (NCBI) 85364
Atlas_Id 75896
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 297563 and ends at 300319 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZCCHC3   16230
Cards
Entrez_Gene (NCBI)ZCCHC3  85364  zinc finger CCHC-type containing 3
AliasesC20orf99
GeneCards (Weizmann)ZCCHC3
Ensembl hg19 (Hinxton)ENSG00000247315 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000247315 [Gene_View]  chr20:297563-300319 [Contig_View]  ZCCHC3 [Vega]
ICGC DataPortalENSG00000247315
TCGA cBioPortalZCCHC3
AceView (NCBI)ZCCHC3
Genatlas (Paris)ZCCHC3
WikiGenes85364
SOURCE (Princeton)ZCCHC3
Genetics Home Reference (NIH)ZCCHC3
Genomic and cartography
GoldenPath hg38 (UCSC)ZCCHC3  -     chr20:297563-300319 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZCCHC3  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblZCCHC3 - 20p13 [CytoView hg19]  ZCCHC3 - 20p13 [CytoView hg38]
Mapping of homologs : NCBIZCCHC3 [Mapview hg19]  ZCCHC3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025768 BC020460 BC036469 BC069238 BC107584
RefSeq transcript (Entrez)NM_033089
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZCCHC3
Cluster EST : UnigeneHs.603608 [ NCBI ]
CGAP (NCI)Hs.603608
Alternative Splicing GalleryENSG00000247315
Gene ExpressionZCCHC3 [ NCBI-GEO ]   ZCCHC3 [ EBI - ARRAY_EXPRESS ]   ZCCHC3 [ SEEK ]   ZCCHC3 [ MEM ]
Gene Expression Viewer (FireBrowse)ZCCHC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85364
GTEX Portal (Tissue expression)ZCCHC3
Human Protein AtlasENSG00000247315-ZCCHC3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUD5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUD5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUD5
Splice isoforms : SwissVarQ9NUD5
PhosPhoSitePlusQ9NUD5
Domaine pattern : Prosite (Expaxy)ZF_CCHC (PS50158)   
Domains : Interpro (EBI)Znf_CCHC   
Domain families : Pfam (Sanger)zf-CCHC (PF00098)   
Domain families : Pfam (NCBI)pfam00098   
Domain families : Smart (EMBL)ZnF_C2HC (SM00343)  
Conserved Domain (NCBI)ZCCHC3
DMDM Disease mutations85364
Blocks (Seattle)ZCCHC3
SuperfamilyQ9NUD5
Human Protein Atlas [tissue]ENSG00000247315-ZCCHC3 [tissue]
Peptide AtlasQ9NUD5
HPRD15701
IPIIPI00011550   IPI00921162   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUD5
IntAct (EBI)Q9NUD5
FunCoupENSG00000247315
BioGRIDZCCHC3
STRING (EMBL)ZCCHC3
ZODIACZCCHC3
Ontologies - Pathways
QuickGOQ9NUD5
Ontology : AmiGORNA binding  zinc ion binding  
Ontology : EGO-EBIRNA binding  zinc ion binding  
NDEx NetworkZCCHC3
Atlas of Cancer Signalling NetworkZCCHC3
Wikipedia pathwaysZCCHC3
Orthology - Evolution
OrthoDB85364
GeneTree (enSembl)ENSG00000247315
Phylogenetic Trees/Animal Genes : TreeFamZCCHC3
HOVERGENQ9NUD5
HOGENOMQ9NUD5
Homologs : HomoloGeneZCCHC3
Homology/Alignments : Family Browser (UCSC)ZCCHC3
Gene fusions - Rearrangements
Tumor Fusion PortalZCCHC3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZCCHC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZCCHC3
dbVarZCCHC3
ClinVarZCCHC3
1000_GenomesZCCHC3 
Exome Variant ServerZCCHC3
ExAC (Exome Aggregation Consortium)ENSG00000247315
GNOMAD BrowserENSG00000247315
Genetic variants : HAPMAP85364
Genomic Variants (DGV)ZCCHC3 [DGVbeta]
DECIPHERZCCHC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZCCHC3 
Mutations
ICGC Data PortalZCCHC3 
TCGA Data PortalZCCHC3 
Broad Tumor PortalZCCHC3
OASIS PortalZCCHC3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZCCHC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZCCHC3
DgiDB (Drug Gene Interaction Database)ZCCHC3
DoCM (Curated mutations)ZCCHC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZCCHC3 (select a term)
intoGenZCCHC3
Cancer3DZCCHC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZCCHC3
MedgenZCCHC3
Genetic Testing Registry ZCCHC3
NextProtQ9NUD5 [Medical]
TSGene85364
GENETestsZCCHC3
Target ValidationZCCHC3
Huge Navigator ZCCHC3 [HugePedia]
snp3D : Map Gene to Disease85364
BioCentury BCIQZCCHC3
ClinGenZCCHC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85364
Chemical/Pharm GKB GenePA25806
Clinical trialZCCHC3
Miscellaneous
canSAR (ICR)ZCCHC3 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZCCHC3
EVEXZCCHC3
GoPubMedZCCHC3
iHOPZCCHC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:42:29 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.