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ZCCHC4 (zinc finger CCHC-type containing 4)

Identity

Alias_symbol (synonym)HSPC052
FLJ23024
ZGRF4
Other alias
HGNC (Hugo) ZCCHC4
LocusID (NCBI) 29063
Atlas_Id 75897
Location 4p15.2  [Link to chromosome band 4p15]
Location_base_pair Starts at 25312774 and ends at 25353127 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
WAPL (10q23.2) / ZCCHC4 (4p15.2)ZCCHC4 (4p15.2) / PTPN14 (1q41)ZCCHC4 (4p15.2) / WAPL (10q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZCCHC4   22917
Cards
Entrez_Gene (NCBI)ZCCHC4  29063  zinc finger CCHC-type containing 4
AliasesHSPC052; ZGRF4
GeneCards (Weizmann)ZCCHC4
Ensembl hg19 (Hinxton)ENSG00000168228 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168228 [Gene_View]  chr4:25312774-25353127 [Contig_View]  ZCCHC4 [Vega]
ICGC DataPortalENSG00000168228
TCGA cBioPortalZCCHC4
AceView (NCBI)ZCCHC4
Genatlas (Paris)ZCCHC4
WikiGenes29063
SOURCE (Princeton)ZCCHC4
Genetics Home Reference (NIH)ZCCHC4
Genomic and cartography
GoldenPath hg38 (UCSC)ZCCHC4  -     chr4:25312774-25353127 +  4p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZCCHC4  -     4p15.2   [Description]    (hg19-Feb_2009)
EnsemblZCCHC4 - 4p15.2 [CytoView hg19]  ZCCHC4 - 4p15.2 [CytoView hg38]
Mapping of homologs : NCBIZCCHC4 [Mapview hg19]  ZCCHC4 [Mapview hg38]
OMIM611792   
Gene and transcription
Genbank (Entrez)AF161537 AK026677 AK299211 AK309675 AY629351
RefSeq transcript (Entrez)NM_001318148 NM_024936
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZCCHC4
Cluster EST : UnigeneHs.687004 [ NCBI ]
CGAP (NCI)Hs.687004
Alternative Splicing GalleryENSG00000168228
Gene ExpressionZCCHC4 [ NCBI-GEO ]   ZCCHC4 [ EBI - ARRAY_EXPRESS ]   ZCCHC4 [ SEEK ]   ZCCHC4 [ MEM ]
Gene Expression Viewer (FireBrowse)ZCCHC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29063
GTEX Portal (Tissue expression)ZCCHC4
Human Protein AtlasENSG00000168228-ZCCHC4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H5U6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H5U6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H5U6
Splice isoforms : SwissVarQ9H5U6
PhosPhoSitePlusQ9H5U6
Domaine pattern : Prosite (Expaxy)DHHC (PS50216)    N6_MTASE (PS00092)   
Domains : Interpro (EBI)DNA_methylase_N6_adenine_CS    Efm5    Znf_GRF   
Domain families : Pfam (Sanger)N6-adenineMlase (PF10237)    zf-GRF (PF06839)   
Domain families : Pfam (NCBI)pfam10237    pfam06839   
Conserved Domain (NCBI)ZCCHC4
DMDM Disease mutations29063
Blocks (Seattle)ZCCHC4
SuperfamilyQ9H5U6
Human Protein Atlas [tissue]ENSG00000168228-ZCCHC4 [tissue]
Peptide AtlasQ9H5U6
IPIIPI00401051   IPI01019092   IPI00965536   IPI00965788   
Protein Interaction databases
DIP (DOE-UCLA)Q9H5U6
IntAct (EBI)Q9H5U6
FunCoupENSG00000168228
BioGRIDZCCHC4
STRING (EMBL)ZCCHC4
ZODIACZCCHC4
Ontologies - Pathways
QuickGOQ9H5U6
Ontology : AmiGOnucleic acid binding  methyltransferase activity  zinc ion binding  transferase activity, transferring acyl groups  methylation  
Ontology : EGO-EBInucleic acid binding  methyltransferase activity  zinc ion binding  transferase activity, transferring acyl groups  methylation  
NDEx NetworkZCCHC4
Atlas of Cancer Signalling NetworkZCCHC4
Wikipedia pathwaysZCCHC4
Orthology - Evolution
OrthoDB29063
GeneTree (enSembl)ENSG00000168228
Phylogenetic Trees/Animal Genes : TreeFamZCCHC4
HOVERGENQ9H5U6
HOGENOMQ9H5U6
Homologs : HomoloGeneZCCHC4
Homology/Alignments : Family Browser (UCSC)ZCCHC4
Gene fusions - Rearrangements
Tumor Fusion PortalZCCHC4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZCCHC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZCCHC4
dbVarZCCHC4
ClinVarZCCHC4
1000_GenomesZCCHC4 
Exome Variant ServerZCCHC4
ExAC (Exome Aggregation Consortium)ENSG00000168228
GNOMAD BrowserENSG00000168228
Genetic variants : HAPMAP29063
Genomic Variants (DGV)ZCCHC4 [DGVbeta]
DECIPHERZCCHC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZCCHC4 
Mutations
ICGC Data PortalZCCHC4 
TCGA Data PortalZCCHC4 
Broad Tumor PortalZCCHC4
OASIS PortalZCCHC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZCCHC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZCCHC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZCCHC4
DgiDB (Drug Gene Interaction Database)ZCCHC4
DoCM (Curated mutations)ZCCHC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZCCHC4 (select a term)
intoGenZCCHC4
Cancer3DZCCHC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611792   
Orphanet
DisGeNETZCCHC4
MedgenZCCHC4
Genetic Testing Registry ZCCHC4
NextProtQ9H5U6 [Medical]
TSGene29063
GENETestsZCCHC4
Target ValidationZCCHC4
Huge Navigator ZCCHC4 [HugePedia]
snp3D : Map Gene to Disease29063
BioCentury BCIQZCCHC4
ClinGenZCCHC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29063
Chemical/Pharm GKB GenePA134950003
Clinical trialZCCHC4
Miscellaneous
canSAR (ICR)ZCCHC4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZCCHC4
EVEXZCCHC4
GoPubMedZCCHC4
iHOPZCCHC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:11:16 CET 2017

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