Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZCCHC5 (zinc finger, CCHC domain containing 5)

Identity

Alias_symbol (synonym)FLJ38865
Mar3
Mart3
ZHC5
Other alias
HGNC (Hugo) ZCCHC5
LocusID (NCBI) 203430
Atlas_Id 75898
Location Xq21.1  [Link to chromosome band Xq21]
Location_base_pair Starts at 77911566 and ends at 77914825 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZCCHC5   22997
Cards
Entrez_Gene (NCBI)ZCCHC5  203430  zinc finger, CCHC domain containing 5
AliasesMar3; Mart3; ZHC5
GeneCards (Weizmann)ZCCHC5
Ensembl hg19 (Hinxton)ENSG00000179300 [Gene_View]  chrX:77911566-77914825 [Contig_View]  ZCCHC5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000179300 [Gene_View]  chrX:77911566-77914825 [Contig_View]  ZCCHC5 [Vega]
ICGC DataPortalENSG00000179300
TCGA cBioPortalZCCHC5
AceView (NCBI)ZCCHC5
Genatlas (Paris)ZCCHC5
WikiGenes203430
SOURCE (Princeton)ZCCHC5
Genetics Home Reference (NIH)ZCCHC5
Genomic and cartography
GoldenPath hg19 (UCSC)ZCCHC5  -     chrX:77911566-77914825 -  Xq21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZCCHC5  -     Xq21.1   [Description]    (hg38-Dec_2013)
EnsemblZCCHC5 - Xq21.1 [CytoView hg19]  ZCCHC5 - Xq21.1 [CytoView hg38]
Mapping of homologs : NCBIZCCHC5 [Mapview hg19]  ZCCHC5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI091777 AK096184 BC136548 BC136549
RefSeq transcript (Entrez)NM_152694
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_015973 NT_011651 NW_004929444
Consensus coding sequences : CCDS (NCBI)ZCCHC5
Cluster EST : UnigeneHs.134873 [ NCBI ]
CGAP (NCI)Hs.134873
Alternative Splicing GalleryENSG00000179300
Gene ExpressionZCCHC5 [ NCBI-GEO ]   ZCCHC5 [ EBI - ARRAY_EXPRESS ]   ZCCHC5 [ SEEK ]   ZCCHC5 [ MEM ]
Gene Expression Viewer (FireBrowse)ZCCHC5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203430
GTEX Portal (Tissue expression)ZCCHC5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8U3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8U3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8U3
Splice isoforms : SwissVarQ8N8U3
PhosPhoSitePlusQ8N8U3
Domaine pattern : Prosite (Expaxy)ZF_CCHC (PS50158)   
Domains : Interpro (EBI)Znf_CCHC   
Domain families : Pfam (Sanger)zf-CCHC (PF00098)   
Domain families : Pfam (NCBI)pfam00098   
Domain families : Smart (EMBL)ZnF_C2HC (SM00343)  
Conserved Domain (NCBI)ZCCHC5
DMDM Disease mutations203430
Blocks (Seattle)ZCCHC5
SuperfamilyQ8N8U3
Human Protein AtlasENSG00000179300
Peptide AtlasQ8N8U3
HPRD06756
IPIIPI00175310   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8U3
IntAct (EBI)Q8N8U3
FunCoupENSG00000179300
BioGRIDZCCHC5
STRING (EMBL)ZCCHC5
ZODIACZCCHC5
Ontologies - Pathways
QuickGOQ8N8U3
Ontology : AmiGOnucleic acid binding  zinc ion binding  
Ontology : EGO-EBInucleic acid binding  zinc ion binding  
NDEx NetworkZCCHC5
Atlas of Cancer Signalling NetworkZCCHC5
Wikipedia pathwaysZCCHC5
Orthology - Evolution
OrthoDB203430
GeneTree (enSembl)ENSG00000179300
Phylogenetic Trees/Animal Genes : TreeFamZCCHC5
HOVERGENQ8N8U3
HOGENOMQ8N8U3
Homologs : HomoloGeneZCCHC5
Homology/Alignments : Family Browser (UCSC)ZCCHC5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZCCHC5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZCCHC5
dbVarZCCHC5
ClinVarZCCHC5
1000_GenomesZCCHC5 
Exome Variant ServerZCCHC5
ExAC (Exome Aggregation Consortium)ZCCHC5 (select the gene name)
Genetic variants : HAPMAP203430
Genomic Variants (DGV)ZCCHC5 [DGVbeta]
DECIPHER (Syndromes)X:77911566-77914825  ENSG00000179300
CONAN: Copy Number AnalysisZCCHC5 
Mutations
ICGC Data PortalZCCHC5 
TCGA Data PortalZCCHC5 
Broad Tumor PortalZCCHC5
OASIS PortalZCCHC5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZCCHC5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZCCHC5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ZCCHC5
DgiDB (Drug Gene Interaction Database)ZCCHC5
DoCM (Curated mutations)ZCCHC5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZCCHC5 (select a term)
intoGenZCCHC5
Cancer3DZCCHC5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZCCHC5
Genetic Testing Registry ZCCHC5
NextProtQ8N8U3 [Medical]
TSGene203430
GENETestsZCCHC5
Huge Navigator ZCCHC5 [HugePedia]
snp3D : Map Gene to Disease203430
BioCentury BCIQZCCHC5
ClinGenZCCHC5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD203430
Chemical/Pharm GKB GenePA134958360
Clinical trialZCCHC5
Miscellaneous
canSAR (ICR)ZCCHC5 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZCCHC5
EVEXZCCHC5
GoPubMedZCCHC5
iHOPZCCHC5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:52:13 CET 2017

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