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ZCCHC6 (zinc finger CCHC-type containing 6)

Identity

Alias_symbol (synonym)KIAA1711
FLJ13409
PAPD6
TUT7
Other alias
HGNC (Hugo) ZCCHC6
LocusID (NCBI) 79670
Atlas_Id 75899
Location 9q21.33  [Link to chromosome band 9q21]
Location_base_pair Starts at 86287733 and ends at 86354487 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CDK5RAP1 (20q11.21) / ZCCHC6 (9q21.33)ZCCHC6 (9q21.33) / ZCCHC6 (9q21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZCCHC6   25817
Cards
Entrez_Gene (NCBI)ZCCHC6  79670  zinc finger CCHC-type containing 6
AliasesPAPD6; TUT7
GeneCards (Weizmann)ZCCHC6
Ensembl hg19 (Hinxton)ENSG00000083223 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000083223 [Gene_View]  chr9:86287733-86354487 [Contig_View]  ZCCHC6 [Vega]
ICGC DataPortalENSG00000083223
TCGA cBioPortalZCCHC6
AceView (NCBI)ZCCHC6
Genatlas (Paris)ZCCHC6
WikiGenes79670
SOURCE (Princeton)ZCCHC6
Genetics Home Reference (NIH)ZCCHC6
Genomic and cartography
GoldenPath hg38 (UCSC)ZCCHC6  -     chr9:86287733-86354487 -  9q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZCCHC6  -     9q21.33   [Description]    (hg19-Feb_2009)
EnsemblZCCHC6 - 9q21.33 [CytoView hg19]  ZCCHC6 - 9q21.33 [CytoView hg38]
Mapping of homologs : NCBIZCCHC6 [Mapview hg19]  ZCCHC6 [Mapview hg38]
OMIM613467   
Gene and transcription
Genbank (Entrez)AB051498 AK023471 AK055546 AK055948 AK058021
RefSeq transcript (Entrez)NM_001185059 NM_001185074 NM_001330718 NM_024617
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZCCHC6
Cluster EST : UnigeneHs.597057 [ NCBI ]
CGAP (NCI)Hs.597057
Alternative Splicing GalleryENSG00000083223
Gene ExpressionZCCHC6 [ NCBI-GEO ]   ZCCHC6 [ EBI - ARRAY_EXPRESS ]   ZCCHC6 [ SEEK ]   ZCCHC6 [ MEM ]
Gene Expression Viewer (FireBrowse)ZCCHC6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79670
GTEX Portal (Tissue expression)ZCCHC6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VYS8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VYS8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VYS8
Splice isoforms : SwissVarQ5VYS8
Catalytic activity : Enzyme2.7.7.52 [ Enzyme-Expasy ]   2.7.7.522.7.7.52 [ IntEnz-EBI ]   2.7.7.52 [ BRENDA ]   2.7.7.52 [ KEGG ]   
PhosPhoSitePlusQ5VYS8
Domaine pattern : Prosite (Expaxy)ZF_CCHC (PS50158)    ZINC_FINGER_C2H2_1 (PS00028)   
Domains : Interpro (EBI)PAP_assoc    Polymerase_NTP_transf_dom    Znf_CCHC    Znf_U1   
Domain families : Pfam (Sanger)NTP_transf_2 (PF01909)    PAP_assoc (PF03828)    zf-CCHC (PF00098)   
Domain families : Pfam (NCBI)pfam01909    pfam03828    pfam00098   
Domain families : Smart (EMBL)ZnF_C2HC (SM00343)  ZnF_U1 (SM00451)  
Conserved Domain (NCBI)ZCCHC6
DMDM Disease mutations79670
Blocks (Seattle)ZCCHC6
SuperfamilyQ5VYS8
Human Protein AtlasENSG00000083223
Peptide AtlasQ5VYS8
HPRD11697
IPIIPI00604491   IPI00374531   IPI00604680   IPI00552923   IPI00604635   IPI00336000   IPI00815815   IPI00643410   IPI00743063   
Protein Interaction databases
DIP (DOE-UCLA)Q5VYS8
IntAct (EBI)Q5VYS8
FunCoupENSG00000083223
BioGRIDZCCHC6
STRING (EMBL)ZCCHC6
ZODIACZCCHC6
Ontologies - Pathways
QuickGOQ5VYS8
Ontology : AmiGORNA binding  nucleoplasm  cytosol  zinc ion binding  RNA 3'-end processing  RNA uridylyltransferase activity  histone mRNA catabolic process  
Ontology : EGO-EBIRNA binding  nucleoplasm  cytosol  zinc ion binding  RNA 3'-end processing  RNA uridylyltransferase activity  histone mRNA catabolic process  
NDEx NetworkZCCHC6
Atlas of Cancer Signalling NetworkZCCHC6
Wikipedia pathwaysZCCHC6
Orthology - Evolution
OrthoDB79670
GeneTree (enSembl)ENSG00000083223
Phylogenetic Trees/Animal Genes : TreeFamZCCHC6
HOVERGENQ5VYS8
HOGENOMQ5VYS8
Homologs : HomoloGeneZCCHC6
Homology/Alignments : Family Browser (UCSC)ZCCHC6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZCCHC6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZCCHC6
dbVarZCCHC6
ClinVarZCCHC6
1000_GenomesZCCHC6 
Exome Variant ServerZCCHC6
ExAC (Exome Aggregation Consortium)ZCCHC6 (select the gene name)
Genetic variants : HAPMAP79670
Genomic Variants (DGV)ZCCHC6 [DGVbeta]
DECIPHERZCCHC6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZCCHC6 
Mutations
ICGC Data PortalZCCHC6 
TCGA Data PortalZCCHC6 
Broad Tumor PortalZCCHC6
OASIS PortalZCCHC6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZCCHC6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZCCHC6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZCCHC6
DgiDB (Drug Gene Interaction Database)ZCCHC6
DoCM (Curated mutations)ZCCHC6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZCCHC6 (select a term)
intoGenZCCHC6
Cancer3DZCCHC6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613467   
Orphanet
MedgenZCCHC6
Genetic Testing Registry ZCCHC6
NextProtQ5VYS8 [Medical]
TSGene79670
GENETestsZCCHC6
Target ValidationZCCHC6
Huge Navigator ZCCHC6 [HugePedia]
snp3D : Map Gene to Disease79670
BioCentury BCIQZCCHC6
ClinGenZCCHC6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79670
Chemical/Pharm GKB GenePA134971144
Clinical trialZCCHC6
Miscellaneous
canSAR (ICR)ZCCHC6 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZCCHC6
EVEXZCCHC6
GoPubMedZCCHC6
iHOPZCCHC6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:12 CEST 2017

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