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ZCCHC9 (zinc finger CCHC-type containing 9)

Identity

Alias_symbol (synonym)DKFZp761J139
PPP1R41
Other alias
HGNC (Hugo) ZCCHC9
LocusID (NCBI) 84240
Atlas_Id 75900
Location 5q14.1  [Link to chromosome band 5q14]
Location_base_pair Starts at 81301583 and ends at 81313146 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CKMT2 (5q14.1) / ZCCHC9 (5q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZCCHC9   25424
Cards
Entrez_Gene (NCBI)ZCCHC9  84240  zinc finger CCHC-type containing 9
AliasesPPP1R41
GeneCards (Weizmann)ZCCHC9
Ensembl hg19 (Hinxton)ENSG00000131732 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131732 [Gene_View]  chr5:81301583-81313146 [Contig_View]  ZCCHC9 [Vega]
ICGC DataPortalENSG00000131732
TCGA cBioPortalZCCHC9
AceView (NCBI)ZCCHC9
Genatlas (Paris)ZCCHC9
WikiGenes84240
SOURCE (Princeton)ZCCHC9
Genetics Home Reference (NIH)ZCCHC9
Genomic and cartography
GoldenPath hg38 (UCSC)ZCCHC9  -     chr5:81301583-81313146 +  5q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZCCHC9  -     5q14.1   [Description]    (hg19-Feb_2009)
EnsemblZCCHC9 - 5q14.1 [CytoView hg19]  ZCCHC9 - 5q14.1 [CytoView hg38]
Mapping of homologs : NCBIZCCHC9 [Mapview hg19]  ZCCHC9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI961614 AK314160 AL512712 BC014841 BC022799
RefSeq transcript (Entrez)NM_001131035 NM_001131036 NM_032280
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZCCHC9
Cluster EST : UnigeneHs.15536 [ NCBI ]
CGAP (NCI)Hs.15536
Alternative Splicing GalleryENSG00000131732
Gene ExpressionZCCHC9 [ NCBI-GEO ]   ZCCHC9 [ EBI - ARRAY_EXPRESS ]   ZCCHC9 [ SEEK ]   ZCCHC9 [ MEM ]
Gene Expression Viewer (FireBrowse)ZCCHC9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84240
GTEX Portal (Tissue expression)ZCCHC9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N567   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N567  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N567
Splice isoforms : SwissVarQ8N567
PhosPhoSitePlusQ8N567
Domaine pattern : Prosite (Expaxy)ZF_CCHC (PS50158)   
Domains : Interpro (EBI)Znf_CCHC   
Domain families : Pfam (Sanger)zf-CCHC (PF00098)   
Domain families : Pfam (NCBI)pfam00098   
Domain families : Smart (EMBL)ZnF_C2HC (SM00343)  
Conserved Domain (NCBI)ZCCHC9
DMDM Disease mutations84240
Blocks (Seattle)ZCCHC9
SuperfamilyQ8N567
Human Protein AtlasENSG00000131732
Peptide AtlasQ8N567
HPRD15704
IPIIPI00410284   
Protein Interaction databases
DIP (DOE-UCLA)Q8N567
IntAct (EBI)Q8N567
FunCoupENSG00000131732
BioGRIDZCCHC9
STRING (EMBL)ZCCHC9
ZODIACZCCHC9
Ontologies - Pathways
QuickGOQ8N567
Ontology : AmiGORNA binding  nucleolus  transcription, DNA-templated  zinc ion binding  negative regulation of phosphatase activity  
Ontology : EGO-EBIRNA binding  nucleolus  transcription, DNA-templated  zinc ion binding  negative regulation of phosphatase activity  
NDEx NetworkZCCHC9
Atlas of Cancer Signalling NetworkZCCHC9
Wikipedia pathwaysZCCHC9
Orthology - Evolution
OrthoDB84240
GeneTree (enSembl)ENSG00000131732
Phylogenetic Trees/Animal Genes : TreeFamZCCHC9
HOVERGENQ8N567
HOGENOMQ8N567
Homologs : HomoloGeneZCCHC9
Homology/Alignments : Family Browser (UCSC)ZCCHC9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZCCHC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZCCHC9
dbVarZCCHC9
ClinVarZCCHC9
1000_GenomesZCCHC9 
Exome Variant ServerZCCHC9
ExAC (Exome Aggregation Consortium)ZCCHC9 (select the gene name)
Genetic variants : HAPMAP84240
Genomic Variants (DGV)ZCCHC9 [DGVbeta]
DECIPHERZCCHC9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZCCHC9 
Mutations
ICGC Data PortalZCCHC9 
TCGA Data PortalZCCHC9 
Broad Tumor PortalZCCHC9
OASIS PortalZCCHC9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZCCHC9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZCCHC9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZCCHC9
DgiDB (Drug Gene Interaction Database)ZCCHC9
DoCM (Curated mutations)ZCCHC9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZCCHC9 (select a term)
intoGenZCCHC9
Cancer3DZCCHC9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZCCHC9
Genetic Testing Registry ZCCHC9
NextProtQ8N567 [Medical]
TSGene84240
GENETestsZCCHC9
Target ValidationZCCHC9
Huge Navigator ZCCHC9 [HugePedia]
snp3D : Map Gene to Disease84240
BioCentury BCIQZCCHC9
ClinGenZCCHC9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84240
Chemical/Pharm GKB GenePA134931870
Clinical trialZCCHC9
Miscellaneous
canSAR (ICR)ZCCHC9 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZCCHC9
EVEXZCCHC9
GoPubMedZCCHC9
iHOPZCCHC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:12 CEST 2017

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