Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZCRB1 (zinc finger CCHC-type and RNA binding motif containing 1)

Identity

Alias_symbol (synonym)MADP-1
MADP1
RBM36
ZCCHC19
SNRNP31
Other alias
HGNC (Hugo) ZCRB1
LocusID (NCBI) 85437
Atlas_Id 75901
Location 12q12  [Link to chromosome band 12q12]
Location_base_pair Starts at 42312086 and ends at 42326130 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SNTB2 (16q22.1) / ZCRB1 (12q12)TMEM117 (12q12) / ZCRB1 (12q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZCRB1   29620
Cards
Entrez_Gene (NCBI)ZCRB1  85437  zinc finger CCHC-type and RNA binding motif containing 1
AliasesMADP-1; MADP1; RBM36; SNRNP31; 
ZCCHC19
GeneCards (Weizmann)ZCRB1
Ensembl hg19 (Hinxton)ENSG00000139168 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139168 [Gene_View]  chr12:42312086-42326130 [Contig_View]  ZCRB1 [Vega]
ICGC DataPortalENSG00000139168
TCGA cBioPortalZCRB1
AceView (NCBI)ZCRB1
Genatlas (Paris)ZCRB1
WikiGenes85437
SOURCE (Princeton)ZCRB1
Genetics Home Reference (NIH)ZCRB1
Genomic and cartography
GoldenPath hg38 (UCSC)ZCRB1  -     chr12:42312086-42326130 -  12q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZCRB1  -     12q12   [Description]    (hg19-Feb_2009)
EnsemblZCRB1 - 12q12 [CytoView hg19]  ZCRB1 - 12q12 [CytoView hg38]
Mapping of homologs : NCBIZCRB1 [Mapview hg19]  ZCRB1 [Mapview hg38]
OMIM610750   
Gene and transcription
Genbank (Entrez)AB062361 AK308244 BC005099 BC010177 BC022543
RefSeq transcript (Entrez)NM_033114
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZCRB1
Cluster EST : UnigeneHs.496279 [ NCBI ]
CGAP (NCI)Hs.496279
Alternative Splicing GalleryENSG00000139168
Gene ExpressionZCRB1 [ NCBI-GEO ]   ZCRB1 [ EBI - ARRAY_EXPRESS ]   ZCRB1 [ SEEK ]   ZCRB1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZCRB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85437
GTEX Portal (Tissue expression)ZCRB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBF4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBF4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBF4
Splice isoforms : SwissVarQ8TBF4
PhosPhoSitePlusQ8TBF4
Domaine pattern : Prosite (Expaxy)RRM (PS50102)    ZF_CCHC (PS50158)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom    RRM_dom_euk    ZCRB1_RRM    Znf_CCHC   
Domain families : Pfam (Sanger)RRM_1 (PF00076)    zf-CCHC (PF00098)   
Domain families : Pfam (NCBI)pfam00076    pfam00098   
Domain families : Smart (EMBL)RRM (SM00360)  RRM_1 (SM00361)  ZnF_C2HC (SM00343)  
Conserved Domain (NCBI)ZCRB1
DMDM Disease mutations85437
Blocks (Seattle)ZCRB1
PDB (SRS)2E5H   
PDB (PDBSum)2E5H   
PDB (IMB)2E5H   
PDB (RSDB)2E5H   
Structural Biology KnowledgeBase2E5H   
SCOP (Structural Classification of Proteins)2E5H   
CATH (Classification of proteins structures)2E5H   
SuperfamilyQ8TBF4
Human Protein AtlasENSG00000139168
Peptide AtlasQ8TBF4
HPRD14344
IPIIPI00154614   IPI01020792   IPI01021444   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBF4
IntAct (EBI)Q8TBF4
FunCoupENSG00000139168
BioGRIDZCRB1
STRING (EMBL)ZCRB1
ZODIACZCRB1
Ontologies - Pathways
QuickGOQ8TBF4
Ontology : AmiGOmRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  RNA binding  nucleoplasm  U12-type spliceosomal complex  zinc ion binding  RNA splicing  
Ontology : EGO-EBImRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  RNA binding  nucleoplasm  U12-type spliceosomal complex  zinc ion binding  RNA splicing  
NDEx NetworkZCRB1
Atlas of Cancer Signalling NetworkZCRB1
Wikipedia pathwaysZCRB1
Orthology - Evolution
OrthoDB85437
GeneTree (enSembl)ENSG00000139168
Phylogenetic Trees/Animal Genes : TreeFamZCRB1
HOVERGENQ8TBF4
HOGENOMQ8TBF4
Homologs : HomoloGeneZCRB1
Homology/Alignments : Family Browser (UCSC)ZCRB1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZCRB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZCRB1
dbVarZCRB1
ClinVarZCRB1
1000_GenomesZCRB1 
Exome Variant ServerZCRB1
ExAC (Exome Aggregation Consortium)ZCRB1 (select the gene name)
Genetic variants : HAPMAP85437
Genomic Variants (DGV)ZCRB1 [DGVbeta]
DECIPHERZCRB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZCRB1 
Mutations
ICGC Data PortalZCRB1 
TCGA Data PortalZCRB1 
Broad Tumor PortalZCRB1
OASIS PortalZCRB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZCRB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZCRB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZCRB1
DgiDB (Drug Gene Interaction Database)ZCRB1
DoCM (Curated mutations)ZCRB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZCRB1 (select a term)
intoGenZCRB1
Cancer3DZCRB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610750   
Orphanet
MedgenZCRB1
Genetic Testing Registry ZCRB1
NextProtQ8TBF4 [Medical]
TSGene85437
GENETestsZCRB1
Huge Navigator ZCRB1 [HugePedia]
snp3D : Map Gene to Disease85437
BioCentury BCIQZCRB1
ClinGenZCRB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85437
Chemical/Pharm GKB GenePA143485674
Clinical trialZCRB1
Miscellaneous
canSAR (ICR)ZCRB1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZCRB1
EVEXZCRB1
GoPubMedZCRB1
iHOPZCRB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:02:10 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.