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ZDBF2 (zinc finger, DBF-type containing 2)

Identity

Alias_symbol (synonym)FLJ45338
KIAA1571
Other alias-
HGNC (Hugo) ZDBF2
LocusID (NCBI) 57683
Atlas_Id 75904
Location 2q33.3  [Link to chromosome band 2q33]
Location_base_pair Starts at 207139752 and ends at 207179150 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ASB8 (12q13.11) / ZDBF2 (2q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZDBF2   29313
LRG (Locus Reference Genomic)LRG_1065
Cards
Entrez_Gene (NCBI)ZDBF2  57683  zinc finger, DBF-type containing 2
Aliases
GeneCards (Weizmann)ZDBF2
Ensembl hg19 (Hinxton)ENSG00000204186 [Gene_View]  chr2:207139752-207179150 [Contig_View]  ZDBF2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204186 [Gene_View]  chr2:207139752-207179150 [Contig_View]  ZDBF2 [Vega]
ICGC DataPortalENSG00000204186
TCGA cBioPortalZDBF2
AceView (NCBI)ZDBF2
Genatlas (Paris)ZDBF2
WikiGenes57683
SOURCE (Princeton)ZDBF2
Genetics Home Reference (NIH)ZDBF2
Genomic and cartography
GoldenPath hg19 (UCSC)ZDBF2  -     chr2:207139752-207179150 +  2q33.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZDBF2  -     2q33.3   [Description]    (hg38-Dec_2013)
EnsemblZDBF2 - 2q33.3 [CytoView hg19]  ZDBF2 - 2q33.3 [CytoView hg38]
Mapping of homologs : NCBIZDBF2 [Mapview hg19]  ZDBF2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB046791 AB775780 AB775781 AK024339 AK127271
RefSeq transcript (Entrez)NM_001285549 NM_020923
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)ZDBF2
Cluster EST : UnigeneHs.110489 [ NCBI ]
CGAP (NCI)Hs.110489
Alternative Splicing GalleryENSG00000204186
Gene ExpressionZDBF2 [ NCBI-GEO ]   ZDBF2 [ EBI - ARRAY_EXPRESS ]   ZDBF2 [ SEEK ]   ZDBF2 [ MEM ]
Gene Expression Viewer (FireBrowse)ZDBF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57683
GTEX Portal (Tissue expression)ZDBF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCK1
Splice isoforms : SwissVarQ9HCK1
PhosPhoSitePlusQ9HCK1
Domaine pattern : Prosite (Expaxy)ZF_DBF4 (PS51265)   
Domains : Interpro (EBI)Znf_DBF   
Domain families : Pfam (Sanger)zf-DBF (PF07535)   
Domain families : Pfam (NCBI)pfam07535   
Conserved Domain (NCBI)ZDBF2
DMDM Disease mutations57683
Blocks (Seattle)ZDBF2
SuperfamilyQ9HCK1
Human Protein AtlasENSG00000204186
Peptide AtlasQ9HCK1
IPIIPI00397930   IPI00983880   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCK1
IntAct (EBI)Q9HCK1
FunCoupENSG00000204186
BioGRIDZDBF2
STRING (EMBL)ZDBF2
ZODIACZDBF2
Ontologies - Pathways
QuickGOQ9HCK1
Ontology : AmiGOnucleic acid binding  zinc ion binding  
Ontology : EGO-EBInucleic acid binding  zinc ion binding  
NDEx NetworkZDBF2
Atlas of Cancer Signalling NetworkZDBF2
Wikipedia pathwaysZDBF2
Orthology - Evolution
OrthoDB57683
GeneTree (enSembl)ENSG00000204186
Phylogenetic Trees/Animal Genes : TreeFamZDBF2
HOVERGENQ9HCK1
HOGENOMQ9HCK1
Homologs : HomoloGeneZDBF2
Homology/Alignments : Family Browser (UCSC)ZDBF2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZDBF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZDBF2
dbVarZDBF2
ClinVarZDBF2
1000_GenomesZDBF2 
Exome Variant ServerZDBF2
ExAC (Exome Aggregation Consortium)ZDBF2 (select the gene name)
Genetic variants : HAPMAP57683
Genomic Variants (DGV)ZDBF2 [DGVbeta]
DECIPHER (Syndromes)2:207139752-207179150  ENSG00000204186
CONAN: Copy Number AnalysisZDBF2 
Mutations
ICGC Data PortalZDBF2 
TCGA Data PortalZDBF2 
Broad Tumor PortalZDBF2
OASIS PortalZDBF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZDBF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZDBF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZDBF2
DgiDB (Drug Gene Interaction Database)ZDBF2
DoCM (Curated mutations)ZDBF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZDBF2 (select a term)
intoGenZDBF2
Cancer3DZDBF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZDBF2
Genetic Testing Registry ZDBF2
NextProtQ9HCK1 [Medical]
TSGene57683
GENETestsZDBF2
Huge Navigator ZDBF2 [HugePedia]
snp3D : Map Gene to Disease57683
BioCentury BCIQZDBF2
ClinGenZDBF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57683
Chemical/Pharm GKB GenePA162409574
Clinical trialZDBF2
Miscellaneous
canSAR (ICR)ZDBF2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZDBF2
EVEXZDBF2
GoPubMedZDBF2
iHOPZDBF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:52:14 CET 2017

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