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ZDHHC1 (zinc finger, DHHC-type containing 1)

Identity

Alias_namesC16orf1
chromosome 16 open reading frame 1
Alias_symbol (synonym)HSU90653
ZNF377
Other alias
HGNC (Hugo) ZDHHC1
LocusID (NCBI) 29800
Atlas_Id 75905
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67428322 and ends at 67450339 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZDHHC1   17916
Cards
Entrez_Gene (NCBI)ZDHHC1  29800  zinc finger, DHHC-type containing 1
AliasesC16orf1; HSU90653; ZNF377
GeneCards (Weizmann)ZDHHC1
Ensembl hg19 (Hinxton)ENSG00000159714 [Gene_View]  chr16:67428322-67450339 [Contig_View]  ZDHHC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000159714 [Gene_View]  chr16:67428322-67450339 [Contig_View]  ZDHHC1 [Vega]
ICGC DataPortalENSG00000159714
TCGA cBioPortalZDHHC1
AceView (NCBI)ZDHHC1
Genatlas (Paris)ZDHHC1
WikiGenes29800
SOURCE (Princeton)ZDHHC1
Genetics Home Reference (NIH)ZDHHC1
Genomic and cartography
GoldenPath hg19 (UCSC)ZDHHC1  -     chr16:67428322-67450339 -  16q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZDHHC1  -     16q22.1   [Description]    (hg38-Dec_2013)
EnsemblZDHHC1 - 16q22.1 [CytoView hg19]  ZDHHC1 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIZDHHC1 [Mapview hg19]  ZDHHC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK307155 BC021908 BC045169 CA432496 U90653
RefSeq transcript (Entrez)NM_013304
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)ZDHHC1
Cluster EST : UnigeneHs.658333 [ NCBI ]
CGAP (NCI)Hs.658333
Alternative Splicing GalleryENSG00000159714
Gene ExpressionZDHHC1 [ NCBI-GEO ]   ZDHHC1 [ EBI - ARRAY_EXPRESS ]   ZDHHC1 [ SEEK ]   ZDHHC1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZDHHC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29800
GTEX Portal (Tissue expression)ZDHHC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WTX9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WTX9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WTX9
Splice isoforms : SwissVarQ8WTX9
Catalytic activity : Enzyme2.3.1.225 [ Enzyme-Expasy ]   2.3.1.2252.3.1.225 [ IntEnz-EBI ]   2.3.1.225 [ BRENDA ]   2.3.1.225 [ KEGG ]   
PhosPhoSitePlusQ8WTX9
Domaine pattern : Prosite (Expaxy)ZF_DHHC (PS50216)   
Domains : Interpro (EBI)Znf_DHHC_palmitoyltrfase   
Domain families : Pfam (Sanger)zf-DHHC (PF01529)   
Domain families : Pfam (NCBI)pfam01529   
Conserved Domain (NCBI)ZDHHC1
DMDM Disease mutations29800
Blocks (Seattle)ZDHHC1
SuperfamilyQ8WTX9
Human Protein AtlasENSG00000159714
Peptide AtlasQ8WTX9
HPRD15707
IPIIPI00102855   IPI00744932   
Protein Interaction databases
DIP (DOE-UCLA)Q8WTX9
IntAct (EBI)Q8WTX9
FunCoupENSG00000159714
BioGRIDZDHHC1
STRING (EMBL)ZDHHC1
ZODIACZDHHC1
Ontologies - Pathways
QuickGOQ8WTX9
Ontology : AmiGODNA binding  endoplasmic reticulum  zinc ion binding  integral component of membrane  palmitoyltransferase activity  protein palmitoylation  protein-cysteine S-palmitoyltransferase activity  extracellular exosome  
Ontology : EGO-EBIDNA binding  endoplasmic reticulum  zinc ion binding  integral component of membrane  palmitoyltransferase activity  protein palmitoylation  protein-cysteine S-palmitoyltransferase activity  extracellular exosome  
NDEx NetworkZDHHC1
Atlas of Cancer Signalling NetworkZDHHC1
Wikipedia pathwaysZDHHC1
Orthology - Evolution
OrthoDB29800
GeneTree (enSembl)ENSG00000159714
Phylogenetic Trees/Animal Genes : TreeFamZDHHC1
HOVERGENQ8WTX9
HOGENOMQ8WTX9
Homologs : HomoloGeneZDHHC1
Homology/Alignments : Family Browser (UCSC)ZDHHC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZDHHC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZDHHC1
dbVarZDHHC1
ClinVarZDHHC1
1000_GenomesZDHHC1 
Exome Variant ServerZDHHC1
ExAC (Exome Aggregation Consortium)ZDHHC1 (select the gene name)
Genetic variants : HAPMAP29800
Genomic Variants (DGV)ZDHHC1 [DGVbeta]
DECIPHER (Syndromes)16:67428322-67450339  ENSG00000159714
CONAN: Copy Number AnalysisZDHHC1 
Mutations
ICGC Data PortalZDHHC1 
TCGA Data PortalZDHHC1 
Broad Tumor PortalZDHHC1
OASIS PortalZDHHC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZDHHC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZDHHC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZDHHC1
DgiDB (Drug Gene Interaction Database)ZDHHC1
DoCM (Curated mutations)ZDHHC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZDHHC1 (select a term)
intoGenZDHHC1
Cancer3DZDHHC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZDHHC1
Genetic Testing Registry ZDHHC1
NextProtQ8WTX9 [Medical]
TSGene29800
GENETestsZDHHC1
Huge Navigator ZDHHC1 [HugePedia]
snp3D : Map Gene to Disease29800
BioCentury BCIQZDHHC1
ClinGenZDHHC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29800
Chemical/Pharm GKB GenePA38261
Clinical trialZDHHC1
Miscellaneous
canSAR (ICR)ZDHHC1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZDHHC1
EVEXZDHHC1
GoPubMedZDHHC1
iHOPZDHHC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:52:14 CET 2017

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