Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZDHHC11 (zinc finger DHHC-type containing 11)

Identity

Alias_symbol (synonym)ZNF399
FLJ13153
Other alias
HGNC (Hugo) ZDHHC11
LocusID (NCBI) 79844
Atlas_Id 50017
Location 5p15.33  [Link to chromosome band 5p15]
Location_base_pair Starts at 795605 and ends at 850986 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARHGEF7 (13q34) / ZDHHC11 (5p15.33)ZDHHC11 (5p15.33) / RNF130 (5q35.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZDHHC11   19158
Cards
Entrez_Gene (NCBI)ZDHHC11  79844  zinc finger DHHC-type containing 11
AliasesZNF399
GeneCards (Weizmann)ZDHHC11
Ensembl hg19 (Hinxton)ENSG00000188818 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188818 [Gene_View]  chr5:795605-850986 [Contig_View]  ZDHHC11 [Vega]
ICGC DataPortalENSG00000188818
TCGA cBioPortalZDHHC11
AceView (NCBI)ZDHHC11
Genatlas (Paris)ZDHHC11
WikiGenes79844
SOURCE (Princeton)ZDHHC11
Genetics Home Reference (NIH)ZDHHC11
Genomic and cartography
GoldenPath hg38 (UCSC)ZDHHC11  -     chr5:795605-850986 -  5p15.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZDHHC11  -     5p15.33   [Description]    (hg19-Feb_2009)
EnsemblZDHHC11 - 5p15.33 [CytoView hg19]  ZDHHC11 - 5p15.33 [CytoView hg38]
Mapping of homologs : NCBIZDHHC11 [Mapview hg19]  ZDHHC11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF267859 AK023215 AK024233 AK096220 AY358673
RefSeq transcript (Entrez)NM_024786
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZDHHC11
Cluster EST : UnigeneHs.732788 [ NCBI ]
CGAP (NCI)Hs.732788
Alternative Splicing GalleryENSG00000188818
Gene ExpressionZDHHC11 [ NCBI-GEO ]   ZDHHC11 [ EBI - ARRAY_EXPRESS ]   ZDHHC11 [ SEEK ]   ZDHHC11 [ MEM ]
Gene Expression Viewer (FireBrowse)ZDHHC11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79844
GTEX Portal (Tissue expression)ZDHHC11
Human Protein AtlasENSG00000188818-ZDHHC11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H8X9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H8X9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H8X9
Splice isoforms : SwissVarQ9H8X9
Catalytic activity : Enzyme2.3.1.225 [ Enzyme-Expasy ]   2.3.1.2252.3.1.225 [ IntEnz-EBI ]   2.3.1.225 [ BRENDA ]   2.3.1.225 [ KEGG ]   
PhosPhoSitePlusQ9H8X9
Domaine pattern : Prosite (Expaxy)DHHC (PS50216)   
Domains : Interpro (EBI)Palmitoyltrfase_DHHC   
Domain families : Pfam (Sanger)zf-DHHC (PF01529)   
Domain families : Pfam (NCBI)pfam01529   
Conserved Domain (NCBI)ZDHHC11
DMDM Disease mutations79844
Blocks (Seattle)ZDHHC11
SuperfamilyQ9H8X9
Human Protein Atlas [tissue]ENSG00000188818-ZDHHC11 [tissue]
Peptide AtlasQ9H8X9
HPRD15708
IPIIPI00015623   IPI00022859   IPI00884186   IPI00967547   IPI00968166   
Protein Interaction databases
DIP (DOE-UCLA)Q9H8X9
IntAct (EBI)Q9H8X9
FunCoupENSG00000188818
BioGRIDZDHHC11
STRING (EMBL)ZDHHC11
ZODIACZDHHC11
Ontologies - Pathways
QuickGOQ9H8X9
Ontology : AmiGOendoplasmic reticulum  integral component of membrane  protein-cysteine S-palmitoyltransferase activity  
Ontology : EGO-EBIendoplasmic reticulum  integral component of membrane  protein-cysteine S-palmitoyltransferase activity  
NDEx NetworkZDHHC11
Atlas of Cancer Signalling NetworkZDHHC11
Wikipedia pathwaysZDHHC11
Orthology - Evolution
OrthoDB79844
GeneTree (enSembl)ENSG00000188818
Phylogenetic Trees/Animal Genes : TreeFamZDHHC11
HOVERGENQ9H8X9
HOGENOMQ9H8X9
Homologs : HomoloGeneZDHHC11
Homology/Alignments : Family Browser (UCSC)ZDHHC11
Gene fusions - Rearrangements
Fusion : MitelmanZDHHC11/RNF130 [5p15.33/5q35.3]  
Tumor Fusion PortalZDHHC11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZDHHC11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZDHHC11
dbVarZDHHC11
ClinVarZDHHC11
1000_GenomesZDHHC11 
Exome Variant ServerZDHHC11
ExAC (Exome Aggregation Consortium)ENSG00000188818
GNOMAD BrowserENSG00000188818
Genetic variants : HAPMAP79844
Genomic Variants (DGV)ZDHHC11 [DGVbeta]
DECIPHERZDHHC11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZDHHC11 
Mutations
ICGC Data PortalZDHHC11 
TCGA Data PortalZDHHC11 
Broad Tumor PortalZDHHC11
OASIS PortalZDHHC11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZDHHC11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZDHHC11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZDHHC11
DgiDB (Drug Gene Interaction Database)ZDHHC11
DoCM (Curated mutations)ZDHHC11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZDHHC11 (select a term)
intoGenZDHHC11
Cancer3DZDHHC11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZDHHC11
MedgenZDHHC11
Genetic Testing Registry ZDHHC11
NextProtQ9H8X9 [Medical]
TSGene79844
GENETestsZDHHC11
Target ValidationZDHHC11
Huge Navigator ZDHHC11 [HugePedia]
snp3D : Map Gene to Disease79844
BioCentury BCIQZDHHC11
ClinGenZDHHC11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79844
Chemical/Pharm GKB GenePA38801
Clinical trialZDHHC11
Miscellaneous
canSAR (ICR)ZDHHC11 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZDHHC11
EVEXZDHHC11
GoPubMedZDHHC11
iHOPZDHHC11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:42:11 CET 2017

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