Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZDHHC11B (zinc finger DHHC-type containing 11B)

Identity

Other aliasDHHC-11B
HGNC (Hugo) ZDHHC11B
LocusID (NCBI) 653082
Atlas_Id 79541
Location 5p15.33  [Link to chromosome band 5p15]
Location_base_pair Starts at 710355 and ends at 766919 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ZDHHC11B   32962
Cards
Entrez_Gene (NCBI)ZDHHC11B  653082  zinc finger DHHC-type containing 11B
AliasesDHHC-11B
GeneCards (Weizmann)ZDHHC11B
Ensembl hg19 (Hinxton)ENSG00000206077 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206077 [Gene_View]  ENSG00000206077 [Sequence]  chr5:710355-766919 [Contig_View]  ZDHHC11B [Vega]
ICGC DataPortalENSG00000206077
TCGA cBioPortalZDHHC11B
AceView (NCBI)ZDHHC11B
Genatlas (Paris)ZDHHC11B
WikiGenes653082
SOURCE (Princeton)ZDHHC11B
Genetics Home Reference (NIH)ZDHHC11B
Genomic and cartography
GoldenPath hg38 (UCSC)ZDHHC11B  -     chr5:710355-766919 -  5p15.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZDHHC11B  -     5p15.33   [Description]    (hg19-Feb_2009)
ZDHHC11B - 5p15.33 [CytoView hg19]  ZDHHC11B - 5p15.33 [CytoView hg38]
Mapping of homologs : NCBIZDHHC11B [Mapview hg19]  ZDHHC11B [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001351303
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZDHHC11B
Alternative Splicing GalleryENSG00000206077
Gene ExpressionZDHHC11B [ NCBI-GEO ]   ZDHHC11B [ EBI - ARRAY_EXPRESS ]   ZDHHC11B [ SEEK ]   ZDHHC11B [ MEM ]
Gene Expression Viewer (FireBrowse)ZDHHC11B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653082
GTEX Portal (Tissue expression)ZDHHC11B
Human Protein AtlasENSG00000206077-ZDHHC11B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7U3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7U3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7U3
Splice isoforms : SwissVarP0C7U3
Catalytic activity : Enzyme2.3.1.225 [ Enzyme-Expasy ]   2.3.1.2252.3.1.225 [ IntEnz-EBI ]   2.3.1.225 [ BRENDA ]   2.3.1.225 [ KEGG ]   
PhosPhoSitePlusP0C7U3
Domaine pattern : Prosite (Expaxy)DHHC (PS50216)   
Domains : Interpro (EBI)Palmitoyltrfase_DHHC   
Domain families : Pfam (Sanger)zf-DHHC (PF01529)   
Domain families : Pfam (NCBI)pfam01529   
Conserved Domain (NCBI)ZDHHC11B
DMDM Disease mutations653082
Blocks (Seattle)ZDHHC11B
SuperfamilyP0C7U3
Human Protein Atlas [tissue]ENSG00000206077-ZDHHC11B [tissue]
Peptide AtlasP0C7U3
IPIIPI00984840   
Protein Interaction databases
DIP (DOE-UCLA)P0C7U3
IntAct (EBI)P0C7U3
FunCoupENSG00000206077
BioGRIDZDHHC11B
STRING (EMBL)ZDHHC11B
ZODIACZDHHC11B
Ontologies - Pathways
QuickGOP0C7U3
Ontology : AmiGOintegral component of membrane  protein-cysteine S-palmitoyltransferase activity  
Ontology : EGO-EBIintegral component of membrane  protein-cysteine S-palmitoyltransferase activity  
NDEx NetworkZDHHC11B
Atlas of Cancer Signalling NetworkZDHHC11B
Wikipedia pathwaysZDHHC11B
Orthology - Evolution
OrthoDB653082
GeneTree (enSembl)ENSG00000206077
Phylogenetic Trees/Animal Genes : TreeFamZDHHC11B
HOGENOMP0C7U3
Homologs : HomoloGeneZDHHC11B
Homology/Alignments : Family Browser (UCSC)ZDHHC11B
Gene fusions - Rearrangements
Fusion : QuiverZDHHC11B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZDHHC11B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZDHHC11B
dbVarZDHHC11B
ClinVarZDHHC11B
1000_GenomesZDHHC11B 
Exome Variant ServerZDHHC11B
ExAC (Exome Aggregation Consortium)ENSG00000206077
GNOMAD BrowserENSG00000206077
Varsome BrowserZDHHC11B
Genetic variants : HAPMAP653082
Genomic Variants (DGV)ZDHHC11B [DGVbeta]
DECIPHERZDHHC11B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZDHHC11B 
Mutations
ICGC Data PortalZDHHC11B 
TCGA Data PortalZDHHC11B 
Broad Tumor PortalZDHHC11B
OASIS PortalZDHHC11B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZDHHC11B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZDHHC11B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZDHHC11B
DgiDB (Drug Gene Interaction Database)ZDHHC11B
DoCM (Curated mutations)ZDHHC11B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZDHHC11B (select a term)
intoGenZDHHC11B
Cancer3DZDHHC11B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZDHHC11B
MedgenZDHHC11B
Genetic Testing Registry ZDHHC11B
NextProtP0C7U3 [Medical]
TSGene653082
GENETestsZDHHC11B
Target ValidationZDHHC11B
Huge Navigator ZDHHC11B [HugePedia]
snp3D : Map Gene to Disease653082
BioCentury BCIQZDHHC11B
ClinGenZDHHC11B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653082
Chemical/Pharm GKB GenePA147357087
Clinical trialZDHHC11B
Miscellaneous
canSAR (ICR)ZDHHC11B (select the gene name)
DataMed IndexZDHHC11B
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZDHHC11B
EVEXZDHHC11B
GoPubMedZDHHC11B
iHOPZDHHC11B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Apr 30 14:02:16 CEST 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.