Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZDHHC17 (zinc finger, DHHC-type containing 17)

Identity

Other namesHIP14
HIP3
HYPH
HGNC (Hugo) ZDHHC17
LocusID (NCBI) 23390
Location 12q21.2
Location_base_pair Starts at 77157854 and ends at 77247474 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZDHHC17   18412
Entrez_Gene (NCBI)ZDHHC17  23390  zinc finger, DHHC-type containing 17
Cards
GeneCards (Weizmann)ZDHHC17
Ensembl (Hinxton)ENSG00000186908 [Gene_View]  chr12:77157854-77247474 [Contig_View]  ZDHHC17 [Vega]
AceView (NCBI)ZDHHC17
Genatlas (Paris)ZDHHC17
SOURCE (Stanford)NM_015336
Genomic and cartography
GoldenPath (UCSC)ZDHHC17  -  12q21.2   chr12:77157854-77247474 +  12q21.2   [Description]    (hg19-Feb_2009)
EnsemblZDHHC17 - 12q21.2 [CytoView]
Mapping of homologs : NCBIZDHHC17 [Mapview]
OMIM607799   
Gene and transcription
Genbank (Entrez)AB023163 AB024494 AB097013 AB097035 AF049612
RefSeq transcript (SRS)NM_015336
RefSeq transcript (Entrez)NM_015336
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838061 NW_004078075
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838061 NW_004078075
Consensus coding sequences : CCDS (NCBI)ZDHHC17
Cluster EST : UnigeneHs.4014 [ SRS ] Hs.4014 [ NCBI ]
CGAP (NCI)Hs.4014
Alternative Splicing : Fast-db (Paris)GSHG0006862
Alternative Splicing GalleryENSG00000186908
Gene ExpressionZDHHC17 [ NCBI-GEO ]   ZDHHC17 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUH5 (SRS) Q8IUH5 (Uniprot)
NextProtQ8IUH5
With graphics : InterProQ8IUH5
Splice isoforms : SwissVarQ8IUH5(Swissvar)
Domaine pattern : Prosite (SRS)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    ZF_DHHC (PS50216)   
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    ZF_DHHC (PS50216)   
Domains : Interpro (SRS)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Znf_DHHC_palmitoyltrfase   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Znf_DHHC_palmitoyltrfase   
Related proteins : CluSTrQ8IUH5
Domain families : Pfam (SRS)Ank (PF00023)    Ank_2 (PF12796)    zf-DHHC (PF01529)   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)    zf-DHHC (PF01529)   
Domain families : Pfam (NCBI)pfam00023    pfam12796    pfam01529   
Domain families : Smart (EMBL)ANK (SM00248)  
DMDM23390
Blocks (Seattle)Q8IUH5
PDB (SRS)3EU9   
PDB (PDBSum)3EU9   
PDB (IMB)3EU9   
PDB (RSDB)3EU9   
Human Protein AtlasENSG00000186908
HPRD09697
IPIIPI00410687   IPI00216753   IPI00410688   IPI01020699   IPI01020849   IPI01021189   IPI01021350   IPI01021645   IPI01021832   IPI01021996   IPI01022144   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUH5
IntAct (EBI)Q8IUH5
FunCoupENSG00000186908
REACTOMEZDHHC17
Protein Interaction Database23390
BioGRIDZDHHC17
InParanoidQ8IUH5
Interologous Interaction database Q8IUH5
IntegromeDBZDHHC17
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ZDHHC17
SNP (GeneSNP Utah)ZDHHC17
SNP : HGBaseZDHHC17
Genetic variants : HAPMAPZDHHC17
Somatic Mutations in Cancer : COSMICZDHHC17 
CONAN: Copy Number AnalysisZDHHC17 
Mutations and Diseases : HGMDZDHHC17
OMIM607799   
GENETests607799   
Disease Genetic AssociationZDHHC17
Huge Navigator ZDHHC17 [HugePedia]  ZDHHC17 [HugeCancerGEM]
Genomic VariantsZDHHC17  ZDHHC17 [DGVbeta]
ClinVarZDHHC17
snp3D : Map Gene to Disease23390
General knowledge
Homologs : HomoloGeneZDHHC17
Homology/Alignments : Family Browser (UCSC)ZDHHC17
Phylogenetic Trees/Animal Genes : TreeFamZDHHC17
Catalytic activity : Enzyme2.3.1.- [ Enzyme-Expasy ]   2.3.1.- [ Enzyme-SRS ]   2.3.1.- [ IntEnz-EBI ]   2.3.1.- [ BRENDA ]   2.3.1.- [ KEGG ]   
Chemical/Protein Interactions : CTD23390
Chemical/Pharm GKB GenePA134991292
Clinical trialZDHHC17
Cancer Resource (Charite)ENSG00000186908
Ontology : AmiGOGolgi membrane  signal transducer activity  protein binding  cytoplasm  Golgi apparatus  signal transduction  zinc ion binding  magnesium ion transmembrane transporter activity  magnesium ion transport  integral to membrane  protein palmitoylation  protein-cysteine S-palmitoleyltransferase activity  Golgi-associated vesicle membrane  lipoprotein transport  positive regulation of I-kappaB kinase/NF-kappaB cascade  intracellular membrane-bounded organelle  
Ontology : EGO-EBIGolgi membrane  signal transducer activity  protein binding  cytoplasm  Golgi apparatus  signal transduction  zinc ion binding  magnesium ion transmembrane transporter activity  magnesium ion transport  integral to membrane  protein palmitoylation  protein-cysteine S-palmitoleyltransferase activity  Golgi-associated vesicle membrane  lipoprotein transport  positive regulation of I-kappaB kinase/NF-kappaB cascade  intracellular membrane-bounded organelle  
Other databases
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
PubGeneZDHHC17
iHOPZDHHC17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:33:04 CEST 2013
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