Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZDHHC17 (zinc finger DHHC-type containing 17)

Identity

Other namesHIP14
HIP3
HSPC294
HYPH
HGNC (Hugo) ZDHHC17
LocusID (NCBI) 23390
Atlas_Id 46045
Location 12q21.2  [Link to chromosome band 12q21]
Location_base_pair Starts at 77157854 and ends at 77247474 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RBP4 (10q23.33) / ZDHHC17 (12q21.2)ZDHHC17 (12q21.2) / RNFT2 (12q24.22)ZDHHC17 (12q21.2) / ZDHHC17 (12q21.2)
ZDHHC17 12q21.2 / RNFT2 12q24.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZDHHC17   18412
Cards
Entrez_Gene (NCBI)ZDHHC17  23390  zinc finger DHHC-type containing 17
AliasesHIP14; HIP3; HSPC294; HYPH
GeneCards (Weizmann)ZDHHC17
Ensembl hg19 (Hinxton)ENSG00000186908 [Gene_View]  chr12:77157854-77247474 [Contig_View]  ZDHHC17 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186908 [Gene_View]  chr12:77157854-77247474 [Contig_View]  ZDHHC17 [Vega]
ICGC DataPortalENSG00000186908
TCGA cBioPortalZDHHC17
AceView (NCBI)ZDHHC17
Genatlas (Paris)ZDHHC17
WikiGenes23390
SOURCE (Princeton)ZDHHC17
Genomic and cartography
GoldenPath hg19 (UCSC)ZDHHC17  -     chr12:77157854-77247474 +  12q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZDHHC17  -     12q21.2   [Description]    (hg38-Dec_2013)
EnsemblZDHHC17 - 12q21.2 [CytoView hg19]  ZDHHC17 - 12q21.2 [CytoView hg38]
Mapping of homologs : NCBIZDHHC17 [Mapview hg19]  ZDHHC17 [Mapview hg38]
OMIM607799   
Gene and transcription
Genbank (Entrez)AB023163 AB024494 AB097013 AB097035 AF049612
RefSeq transcript (Entrez)NM_015336
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)ZDHHC17
Cluster EST : UnigeneHs.4014 [ NCBI ]
CGAP (NCI)Hs.4014
Alternative Splicing GalleryENSG00000186908
Gene ExpressionZDHHC17 [ NCBI-GEO ]   ZDHHC17 [ EBI - ARRAY_EXPRESS ]   ZDHHC17 [ SEEK ]   ZDHHC17 [ MEM ]
Gene Expression Viewer (FireBrowse)ZDHHC17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23390
GTEX Portal (Tissue expression)ZDHHC17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUH5 (Uniprot)
NextProtQ8IUH5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUH5
Splice isoforms : SwissVarQ8IUH5 (Swissvar)
PhosPhoSitePlusQ8IUH5
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    ZF_DHHC (PS50216)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    ZDHHC17    Znf_DHHC_palmitoyltrfase   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    zf-DHHC (PF01529)   
Domain families : Pfam (NCBI)pfam12796    pfam01529   
Domain families : Smart (EMBL)ANK (SM00248)  
DMDM Disease mutations23390
Blocks (Seattle)ZDHHC17
PDB (SRS)3EU9   
PDB (PDBSum)3EU9   
PDB (IMB)3EU9   
PDB (RSDB)3EU9   
Structural Biology KnowledgeBase3EU9   
SCOP (Structural Classification of Proteins)3EU9   
CATH (Classification of proteins structures)3EU9   
SuperfamilyQ8IUH5
Human Protein AtlasENSG00000186908
Peptide AtlasQ8IUH5
HPRD09697
IPIIPI00410687   IPI00216753   IPI00410688   IPI01020699   IPI01020849   IPI01021189   IPI01021350   IPI01021645   IPI01021832   IPI01021996   IPI01022144   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUH5
IntAct (EBI)Q8IUH5
FunCoupENSG00000186908
BioGRIDZDHHC17
STRING (EMBL)ZDHHC17
ZODIACZDHHC17
Ontologies - Pathways
QuickGOQ8IUH5
Ontology : AmiGOGolgi membrane  signal transducer activity  protein binding  cytoplasm  Golgi apparatus  signal transduction  zinc ion binding  magnesium ion transmembrane transporter activity  integral component of membrane  palmitoyltransferase activity  protein palmitoylation  protein-cysteine S-palmitoyltransferase activity  Golgi-associated vesicle membrane  identical protein binding  lipoprotein transport  positive regulation of I-kappaB kinase/NF-kappaB signaling  intracellular membrane-bounded organelle  magnesium ion transmembrane transport  magnesium ion transmembrane transport  
Ontology : EGO-EBIGolgi membrane  signal transducer activity  protein binding  cytoplasm  Golgi apparatus  signal transduction  zinc ion binding  magnesium ion transmembrane transporter activity  integral component of membrane  palmitoyltransferase activity  protein palmitoylation  protein-cysteine S-palmitoyltransferase activity  Golgi-associated vesicle membrane  identical protein binding  lipoprotein transport  positive regulation of I-kappaB kinase/NF-kappaB signaling  intracellular membrane-bounded organelle  magnesium ion transmembrane transport  magnesium ion transmembrane transport  
NDEx NetworkZDHHC17
Atlas of Cancer Signalling NetworkZDHHC17
Wikipedia pathwaysZDHHC17
Orthology - Evolution
OrthoDB23390
GeneTree (enSembl)ENSG00000186908
Phylogenetic Trees/Animal Genes : TreeFamZDHHC17
Homologs : HomoloGeneZDHHC17
Homology/Alignments : Family Browser (UCSC)ZDHHC17
Gene fusions - Rearrangements
Fusion: TCGAZDHHC17 12q21.2 RNFT2 12q24.22 LUAD
Polymorphisms : SNP, variants
NCBI Variation ViewerZDHHC17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZDHHC17
dbVarZDHHC17
ClinVarZDHHC17
1000_GenomesZDHHC17 
Exome Variant ServerZDHHC17
ExAC (Exome Aggregation Consortium)ZDHHC17 (select the gene name)
Genetic variants : HAPMAP23390
Genomic Variants (DGV)ZDHHC17 [DGVbeta]
Mutations
ICGC Data PortalZDHHC17 
TCGA Data PortalZDHHC17 
Broad Tumor PortalZDHHC17
OASIS PortalZDHHC17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZDHHC17 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZDHHC17
DgiDB (Drug Gene Interaction Database)ZDHHC17
DoCM (Curated mutations)ZDHHC17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZDHHC17 (select a term)
intoGenZDHHC17
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)12:77157854-77247474  ENSG00000186908
CONAN: Copy Number AnalysisZDHHC17 
Mutations and Diseases : HGMDZDHHC17
OMIM607799   
MedgenZDHHC17
Genetic Testing Registry ZDHHC17
NextProtQ8IUH5 [Medical]
TSGene23390
GENETestsZDHHC17
Huge Navigator ZDHHC17 [HugePedia]
snp3D : Map Gene to Disease23390
BioCentury BCIQZDHHC17
ClinGenZDHHC17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23390
Chemical/Pharm GKB GenePA134991292
Clinical trialZDHHC17
Miscellaneous
canSAR (ICR)ZDHHC17 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZDHHC17
EVEXZDHHC17
GoPubMedZDHHC17
iHOPZDHHC17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 19 19:20:12 CEST 2016

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.