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ZDHHC17 (zinc finger, DHHC-type containing 17)

Identity

Other namesHIP14
HIP3
HYPH
HGNC (Hugo) ZDHHC17
LocusID (NCBI) 23390
Location 12q21.2
Location_base_pair Starts at 77157854 and ends at 77247474 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZDHHC17   18412
Cards
Entrez_Gene (NCBI)ZDHHC17  23390  zinc finger, DHHC-type containing 17
GeneCards (Weizmann)ZDHHC17
Ensembl (Hinxton)ENSG00000186908 [Gene_View]  chr12:77157854-77247474 [Contig_View]  ZDHHC17 [Vega]
ICGC DataPortalENSG00000186908
AceView (NCBI)ZDHHC17
Genatlas (Paris)ZDHHC17
WikiGenes23390
SOURCE (Princeton)NM_015336
Genomic and cartography
GoldenPath (UCSC)ZDHHC17  -  12q21.2   chr12:77157854-77247474 +  12q21.2   [Description]    (hg19-Feb_2009)
EnsemblZDHHC17 - 12q21.2 [CytoView]
Mapping of homologs : NCBIZDHHC17 [Mapview]
OMIM607799   
Gene and transcription
Genbank (Entrez)AB023163 AB024494 AB097013 AB097035 AF049612
RefSeq transcript (Entrez)NM_015336
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838061 NW_004929384
Consensus coding sequences : CCDS (NCBI)ZDHHC17
Cluster EST : UnigeneHs.4014 [ NCBI ]
CGAP (NCI)Hs.4014
Alternative Splicing : Fast-db (Paris)GSHG0006862
Alternative Splicing GalleryENSG00000186908
Gene ExpressionZDHHC17 [ NCBI-GEO ]     ZDHHC17 [ SEEK ]   ZDHHC17 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUH5 (Uniprot)
NextProtQ8IUH5  [Medical]
With graphics : InterProQ8IUH5
Splice isoforms : SwissVarQ8IUH5 (Swissvar)
Catalytic activity : Enzyme2.3.1.225 [ Enzyme-Expasy ]   2.3.1.2252.3.1.225 [ IntEnz-EBI ]   2.3.1.225 [ BRENDA ]   2.3.1.225 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    ZF_DHHC (PS50216)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Znf_DHHC_palmitoyltrfase   
Related proteins : CluSTrQ8IUH5
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)    zf-DHHC (PF01529)   
Domain families : Pfam (NCBI)pfam00023    pfam12796    pfam01529   
Domain families : Smart (EMBL)ANK (SM00248)  
DMDM Disease mutations23390
Blocks (Seattle)Q8IUH5
PDB (SRS)3EU9   
PDB (PDBSum)3EU9   
PDB (IMB)3EU9   
PDB (RSDB)3EU9   
Human Protein AtlasENSG00000186908
Peptide AtlasQ8IUH5
HPRD09697
IPIIPI00410687   IPI00216753   IPI00410688   IPI01020699   IPI01020849   IPI01021189   IPI01021350   IPI01021645   IPI01021832   IPI01021996   IPI01022144   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUH5
IntAct (EBI)Q8IUH5
FunCoupENSG00000186908
BioGRIDZDHHC17
IntegromeDBZDHHC17
STRING (EMBL)ZDHHC17
Ontologies - Pathways
QuickGOQ8IUH5
Ontology : AmiGOGolgi membrane  signal transducer activity  protein binding  cytoplasm  Golgi apparatus  signal transduction  zinc ion binding  magnesium ion transmembrane transporter activity  magnesium ion transport  integral component of membrane  palmitoyltransferase activity  protein palmitoylation  protein-cysteine S-palmitoyltransferase activity  Golgi-associated vesicle membrane  identical protein binding  lipoprotein transport  positive regulation of I-kappaB kinase/NF-kappaB signaling  intracellular membrane-bounded organelle  
Ontology : EGO-EBIGolgi membrane  signal transducer activity  protein binding  cytoplasm  Golgi apparatus  signal transduction  zinc ion binding  magnesium ion transmembrane transporter activity  magnesium ion transport  integral component of membrane  palmitoyltransferase activity  protein palmitoylation  protein-cysteine S-palmitoyltransferase activity  Golgi-associated vesicle membrane  identical protein binding  lipoprotein transport  positive regulation of I-kappaB kinase/NF-kappaB signaling  intracellular membrane-bounded organelle  
Protein Interaction DatabaseZDHHC17
Wikipedia pathwaysZDHHC17
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ZDHHC17
SNP (GeneSNP Utah)ZDHHC17
SNP : HGBaseZDHHC17
Genetic variants : HAPMAPZDHHC17
1000_GenomesZDHHC17 
ICGC programENSG00000186908 
CONAN: Copy Number AnalysisZDHHC17 
Somatic Mutations in Cancer : COSMICZDHHC17 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
DECIPHER (Syndromes)12:77157854-77247474
Mutations and Diseases : HGMDZDHHC17
OMIM607799   
MedgenZDHHC17
GENETestsZDHHC17
Disease Genetic AssociationZDHHC17
Huge Navigator ZDHHC17 [HugePedia]  ZDHHC17 [HugeCancerGEM]
Genomic VariantsZDHHC17  ZDHHC17 [DGVbeta]
Exome VariantZDHHC17
dbVarZDHHC17
ClinVarZDHHC17
snp3D : Map Gene to Disease23390
General knowledge
Homologs : HomoloGeneZDHHC17
Homology/Alignments : Family Browser (UCSC)ZDHHC17
Phylogenetic Trees/Animal Genes : TreeFamZDHHC17
Chemical/Protein Interactions : CTD23390
Chemical/Pharm GKB GenePA134991292
Clinical trialZDHHC17
Cancer Resource (Charite)ENSG00000186908
Other databases
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
CoreMineZDHHC17
GoPubMedZDHHC17
iHOPZDHHC17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 18:06:27 CET 2014

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