Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZDHHC19 (zinc finger DHHC-type containing 19)

Identity

Alias_symbol (synonym)MGC33345
Other aliasDHHC19
HGNC (Hugo) ZDHHC19
LocusID (NCBI) 131540
Atlas_Id 75910
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 196197452 and ends at 196211429 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZDHHC19   20713
Cards
Entrez_Gene (NCBI)ZDHHC19  131540  zinc finger DHHC-type containing 19
AliasesDHHC19
GeneCards (Weizmann)ZDHHC19
Ensembl hg19 (Hinxton)ENSG00000163958 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163958 [Gene_View]  chr3:196197452-196211429 [Contig_View]  ZDHHC19 [Vega]
ICGC DataPortalENSG00000163958
TCGA cBioPortalZDHHC19
AceView (NCBI)ZDHHC19
Genatlas (Paris)ZDHHC19
WikiGenes131540
SOURCE (Princeton)ZDHHC19
Genetics Home Reference (NIH)ZDHHC19
Genomic and cartography
GoldenPath hg38 (UCSC)ZDHHC19  -     chr3:196197452-196211429 -  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZDHHC19  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblZDHHC19 - 3q29 [CytoView hg19]  ZDHHC19 - 3q29 [CytoView hg38]
Mapping of homologs : NCBIZDHHC19 [Mapview hg19]  ZDHHC19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA724452 AK122907 BC022078 BC034801 BG721568
RefSeq transcript (Entrez)NM_001039617
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZDHHC19
Cluster EST : UnigeneHs.111591 [ NCBI ]
CGAP (NCI)Hs.111591
Alternative Splicing GalleryENSG00000163958
Gene ExpressionZDHHC19 [ NCBI-GEO ]   ZDHHC19 [ EBI - ARRAY_EXPRESS ]   ZDHHC19 [ SEEK ]   ZDHHC19 [ MEM ]
Gene Expression Viewer (FireBrowse)ZDHHC19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)131540
GTEX Portal (Tissue expression)ZDHHC19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVZ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVZ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVZ1
Splice isoforms : SwissVarQ8WVZ1
Catalytic activity : Enzyme2.3.1.225 [ Enzyme-Expasy ]   2.3.1.2252.3.1.225 [ IntEnz-EBI ]   2.3.1.225 [ BRENDA ]   2.3.1.225 [ KEGG ]   
PhosPhoSitePlusQ8WVZ1
Domaine pattern : Prosite (Expaxy)DHHC (PS50216)   
Domains : Interpro (EBI)Palmitoyltrfase_DHHC   
Domain families : Pfam (Sanger)zf-DHHC (PF01529)   
Domain families : Pfam (NCBI)pfam01529   
Conserved Domain (NCBI)ZDHHC19
DMDM Disease mutations131540
Blocks (Seattle)ZDHHC19
SuperfamilyQ8WVZ1
Human Protein AtlasENSG00000163958
Peptide AtlasQ8WVZ1
HPRD15714
IPIIPI00103280   IPI00915280   IPI00924671   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVZ1
IntAct (EBI)Q8WVZ1
FunCoupENSG00000163958
BioGRIDZDHHC19
STRING (EMBL)ZDHHC19
ZODIACZDHHC19
Ontologies - Pathways
QuickGOQ8WVZ1
Ontology : AmiGOendoplasmic reticulum  integral component of membrane  protein-cysteine S-palmitoyltransferase activity  
Ontology : EGO-EBIendoplasmic reticulum  integral component of membrane  protein-cysteine S-palmitoyltransferase activity  
NDEx NetworkZDHHC19
Atlas of Cancer Signalling NetworkZDHHC19
Wikipedia pathwaysZDHHC19
Orthology - Evolution
OrthoDB131540
GeneTree (enSembl)ENSG00000163958
Phylogenetic Trees/Animal Genes : TreeFamZDHHC19
HOVERGENQ8WVZ1
HOGENOMQ8WVZ1
Homologs : HomoloGeneZDHHC19
Homology/Alignments : Family Browser (UCSC)ZDHHC19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZDHHC19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZDHHC19
dbVarZDHHC19
ClinVarZDHHC19
1000_GenomesZDHHC19 
Exome Variant ServerZDHHC19
ExAC (Exome Aggregation Consortium)ZDHHC19 (select the gene name)
Genetic variants : HAPMAP131540
Genomic Variants (DGV)ZDHHC19 [DGVbeta]
DECIPHERZDHHC19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZDHHC19 
Mutations
ICGC Data PortalZDHHC19 
TCGA Data PortalZDHHC19 
Broad Tumor PortalZDHHC19
OASIS PortalZDHHC19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZDHHC19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZDHHC19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZDHHC19
DgiDB (Drug Gene Interaction Database)ZDHHC19
DoCM (Curated mutations)ZDHHC19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZDHHC19 (select a term)
intoGenZDHHC19
Cancer3DZDHHC19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZDHHC19
Genetic Testing Registry ZDHHC19
NextProtQ8WVZ1 [Medical]
TSGene131540
GENETestsZDHHC19
Target ValidationZDHHC19
Huge Navigator ZDHHC19 [HugePedia]
snp3D : Map Gene to Disease131540
BioCentury BCIQZDHHC19
ClinGenZDHHC19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD131540
Chemical/Pharm GKB GenePA134871748
Clinical trialZDHHC19
Miscellaneous
canSAR (ICR)ZDHHC19 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZDHHC19
EVEXZDHHC19
GoPubMedZDHHC19
iHOPZDHHC19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:49:38 CEST 2017

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