Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZDHHC20 (zinc finger DHHC-type containing 20)

Identity

Alias_symbol (synonym)FLJ25952
Other alias4933421L13Rik
DHHC-20
HGNC (Hugo) ZDHHC20
LocusID (NCBI) 253832
Atlas_Id 51705
Location 13q12.11  [Link to chromosome band 13q12]
Location_base_pair Starts at 21946710 and ends at 22033509 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZDHHC20 (13q12.11) / HBB (11p15.4)ZDHHC20 (13q12.11) / MICU2 (13q12.11)ZDHHC20 (13q12.11) / MIPEP (13q12.12)
ZDHHC20 (13q12.11) / MTHFD2L (4q13.3)ZDHHC20 (13q12.11) / SNTA1 (20q11.21)ZDHHC20 (13q12.11) / UBIAD1 (1p36.22)
ZRANB1 (10q26.13) / ZDHHC20 (13q12.11)ZDHHC20 13q12.11 EFHA1ZDHHC20 13q12.11 / MIPEP 13q12.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZDHHC20   20749
Cards
Entrez_Gene (NCBI)ZDHHC20  253832  zinc finger DHHC-type containing 20
Aliases4933421L13Rik; DHHC-20
GeneCards (Weizmann)ZDHHC20
Ensembl hg19 (Hinxton)ENSG00000180776 [Gene_View]  chr13:21946710-22033509 [Contig_View]  ZDHHC20 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180776 [Gene_View]  chr13:21946710-22033509 [Contig_View]  ZDHHC20 [Vega]
ICGC DataPortalENSG00000180776
TCGA cBioPortalZDHHC20
AceView (NCBI)ZDHHC20
Genatlas (Paris)ZDHHC20
WikiGenes253832
SOURCE (Princeton)ZDHHC20
Genetics Home Reference (NIH)ZDHHC20
Genomic and cartography
GoldenPath hg19 (UCSC)ZDHHC20  -     chr13:21946710-22033509 -  13q12.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZDHHC20  -     13q12.11   [Description]    (hg38-Dec_2013)
EnsemblZDHHC20 - 13q12.11 [CytoView hg19]  ZDHHC20 - 13q12.11 [CytoView hg38]
Mapping of homologs : NCBIZDHHC20 [Mapview hg19]  ZDHHC20 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090979 AK098818 AK295804 AK299354 AL833626
RefSeq transcript (Entrez)NM_001286638 NM_153251
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)ZDHHC20
Cluster EST : UnigeneHs.564611 [ NCBI ]
CGAP (NCI)Hs.564611
Alternative Splicing GalleryENSG00000180776
Gene ExpressionZDHHC20 [ NCBI-GEO ]   ZDHHC20 [ EBI - ARRAY_EXPRESS ]   ZDHHC20 [ SEEK ]   ZDHHC20 [ MEM ]
Gene Expression Viewer (FireBrowse)ZDHHC20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)253832
GTEX Portal (Tissue expression)ZDHHC20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5W0Z9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5W0Z9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5W0Z9
Splice isoforms : SwissVarQ5W0Z9
Catalytic activity : Enzyme2.3.1.225 [ Enzyme-Expasy ]   2.3.1.2252.3.1.225 [ IntEnz-EBI ]   2.3.1.225 [ BRENDA ]   2.3.1.225 [ KEGG ]   
PhosPhoSitePlusQ5W0Z9
Domaine pattern : Prosite (Expaxy)ZF_DHHC (PS50216)   
Domains : Interpro (EBI)Znf_DHHC_palmitoyltrfase   
Domain families : Pfam (Sanger)zf-DHHC (PF01529)   
Domain families : Pfam (NCBI)pfam01529   
Conserved Domain (NCBI)ZDHHC20
DMDM Disease mutations253832
Blocks (Seattle)ZDHHC20
SuperfamilyQ5W0Z9
Human Protein AtlasENSG00000180776
Peptide AtlasQ5W0Z9
HPRD08078
IPIIPI00398974   IPI00655982   IPI00941781   IPI01011915   IPI00871230   IPI00166154   
Protein Interaction databases
DIP (DOE-UCLA)Q5W0Z9
IntAct (EBI)Q5W0Z9
FunCoupENSG00000180776
BioGRIDZDHHC20
STRING (EMBL)ZDHHC20
ZODIACZDHHC20
Ontologies - Pathways
QuickGOQ5W0Z9
Ontology : AmiGOplasma membrane  zinc ion binding  membrane  integral component of membrane  palmitoyltransferase activity  protein palmitoylation  protein-cysteine S-palmitoyltransferase activity  
Ontology : EGO-EBIplasma membrane  zinc ion binding  membrane  integral component of membrane  palmitoyltransferase activity  protein palmitoylation  protein-cysteine S-palmitoyltransferase activity  
NDEx NetworkZDHHC20
Atlas of Cancer Signalling NetworkZDHHC20
Wikipedia pathwaysZDHHC20
Orthology - Evolution
OrthoDB253832
GeneTree (enSembl)ENSG00000180776
Phylogenetic Trees/Animal Genes : TreeFamZDHHC20
HOVERGENQ5W0Z9
HOGENOMQ5W0Z9
Homologs : HomoloGeneZDHHC20
Homology/Alignments : Family Browser (UCSC)ZDHHC20
Gene fusions - Rearrangements
Fusion : MitelmanZDHHC20/MICU2 [13q12.11/13q12.11]  
Fusion : MitelmanZDHHC20/MIPEP [13q12.11/13q12.12]  [t(13;13)(q12;q12)]  
Fusion: TCGAZDHHC20 13q12.11 EFHA1 BLCA
Fusion: TCGAZDHHC20 13q12.11 MIPEP 13q12.12 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZDHHC20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZDHHC20
dbVarZDHHC20
ClinVarZDHHC20
1000_GenomesZDHHC20 
Exome Variant ServerZDHHC20
ExAC (Exome Aggregation Consortium)ZDHHC20 (select the gene name)
Genetic variants : HAPMAP253832
Genomic Variants (DGV)ZDHHC20 [DGVbeta]
DECIPHER (Syndromes)13:21946710-22033509  ENSG00000180776
CONAN: Copy Number AnalysisZDHHC20 
Mutations
ICGC Data PortalZDHHC20 
TCGA Data PortalZDHHC20 
Broad Tumor PortalZDHHC20
OASIS PortalZDHHC20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZDHHC20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZDHHC20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZDHHC20
DgiDB (Drug Gene Interaction Database)ZDHHC20
DoCM (Curated mutations)ZDHHC20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZDHHC20 (select a term)
intoGenZDHHC20
Cancer3DZDHHC20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZDHHC20
Genetic Testing Registry ZDHHC20
NextProtQ5W0Z9 [Medical]
TSGene253832
GENETestsZDHHC20
Huge Navigator ZDHHC20 [HugePedia]
snp3D : Map Gene to Disease253832
BioCentury BCIQZDHHC20
ClinGenZDHHC20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD253832
Chemical/Pharm GKB GenePA134880838
Clinical trialZDHHC20
Miscellaneous
canSAR (ICR)ZDHHC20 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZDHHC20
EVEXZDHHC20
GoPubMedZDHHC20
iHOPZDHHC20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:25:28 CEST 2017

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