Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZDHHC23 (zinc finger DHHC-type containing 23)

Identity

Alias_symbol (synonym)MGC42530
Other aliasDHHC-23
NIDD
HGNC (Hugo) ZDHHC23
LocusID (NCBI) 254887
Atlas_Id 75913
Location 3q13.31  [Link to chromosome band 3q13]
Location_base_pair Starts at 113947901 and ends at 113963373 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZDHHC23   28654
Cards
Entrez_Gene (NCBI)ZDHHC23  254887  zinc finger DHHC-type containing 23
AliasesDHHC-23; NIDD
GeneCards (Weizmann)ZDHHC23
Ensembl hg19 (Hinxton)ENSG00000184307 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184307 [Gene_View]  chr3:113947901-113963373 [Contig_View]  ZDHHC23 [Vega]
ICGC DataPortalENSG00000184307
TCGA cBioPortalZDHHC23
AceView (NCBI)ZDHHC23
Genatlas (Paris)ZDHHC23
WikiGenes254887
SOURCE (Princeton)ZDHHC23
Genetics Home Reference (NIH)ZDHHC23
Genomic and cartography
GoldenPath hg38 (UCSC)ZDHHC23  -     chr3:113947901-113963373 +  3q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZDHHC23  -     3q13.31   [Description]    (hg19-Feb_2009)
EnsemblZDHHC23 - 3q13.31 [CytoView hg19]  ZDHHC23 - 3q13.31 [CytoView hg38]
Mapping of homologs : NCBIZDHHC23 [Mapview hg19]  ZDHHC23 [Mapview hg38]
OMIM617334   
Gene and transcription
Genbank (Entrez)AF131818 AK022842 AK127025 AK127260 AK127996
RefSeq transcript (Entrez)NM_001320466 NM_001320467 NM_001320468 NM_173570
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZDHHC23
Cluster EST : UnigeneHs.21902 [ NCBI ]
CGAP (NCI)Hs.21902
Alternative Splicing GalleryENSG00000184307
Gene ExpressionZDHHC23 [ NCBI-GEO ]   ZDHHC23 [ EBI - ARRAY_EXPRESS ]   ZDHHC23 [ SEEK ]   ZDHHC23 [ MEM ]
Gene Expression Viewer (FireBrowse)ZDHHC23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254887
GTEX Portal (Tissue expression)ZDHHC23
Human Protein AtlasENSG00000184307-ZDHHC23 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYP9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYP9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYP9
Splice isoforms : SwissVarQ8IYP9
Catalytic activity : Enzyme2.3.1.225 [ Enzyme-Expasy ]   2.3.1.2252.3.1.225 [ IntEnz-EBI ]   2.3.1.225 [ BRENDA ]   2.3.1.225 [ KEGG ]   
PhosPhoSitePlusQ8IYP9
Domaine pattern : Prosite (Expaxy)DHHC (PS50216)   
Domains : Interpro (EBI)Palmitoyltrfase_DHHC   
Domain families : Pfam (Sanger)zf-DHHC (PF01529)   
Domain families : Pfam (NCBI)pfam01529   
Conserved Domain (NCBI)ZDHHC23
DMDM Disease mutations254887
Blocks (Seattle)ZDHHC23
SuperfamilyQ8IYP9
Human Protein Atlas [tissue]ENSG00000184307-ZDHHC23 [tissue]
Peptide AtlasQ8IYP9
HPRD15717
IPIIPI00942470   IPI00985254   IPI00946593   IPI00217823   IPI00944966   IPI00946898   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYP9
IntAct (EBI)Q8IYP9
FunCoupENSG00000184307
BioGRIDZDHHC23
STRING (EMBL)ZDHHC23
ZODIACZDHHC23
Ontologies - Pathways
QuickGOQ8IYP9
Ontology : AmiGOintegral component of membrane  protein palmitoylation  protein-cysteine S-palmitoyltransferase activity  protein localization to plasma membrane  
Ontology : EGO-EBIintegral component of membrane  protein palmitoylation  protein-cysteine S-palmitoyltransferase activity  protein localization to plasma membrane  
NDEx NetworkZDHHC23
Atlas of Cancer Signalling NetworkZDHHC23
Wikipedia pathwaysZDHHC23
Orthology - Evolution
OrthoDB254887
GeneTree (enSembl)ENSG00000184307
Phylogenetic Trees/Animal Genes : TreeFamZDHHC23
HOVERGENQ8IYP9
HOGENOMQ8IYP9
Homologs : HomoloGeneZDHHC23
Homology/Alignments : Family Browser (UCSC)ZDHHC23
Gene fusions - Rearrangements
Tumor Fusion PortalZDHHC23
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZDHHC23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZDHHC23
dbVarZDHHC23
ClinVarZDHHC23
1000_GenomesZDHHC23 
Exome Variant ServerZDHHC23
ExAC (Exome Aggregation Consortium)ENSG00000184307
GNOMAD BrowserENSG00000184307
Genetic variants : HAPMAP254887
Genomic Variants (DGV)ZDHHC23 [DGVbeta]
DECIPHERZDHHC23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZDHHC23 
Mutations
ICGC Data PortalZDHHC23 
TCGA Data PortalZDHHC23 
Broad Tumor PortalZDHHC23
OASIS PortalZDHHC23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZDHHC23  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZDHHC23
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZDHHC23
DgiDB (Drug Gene Interaction Database)ZDHHC23
DoCM (Curated mutations)ZDHHC23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZDHHC23 (select a term)
intoGenZDHHC23
Cancer3DZDHHC23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617334   
Orphanet
DisGeNETZDHHC23
MedgenZDHHC23
Genetic Testing Registry ZDHHC23
NextProtQ8IYP9 [Medical]
TSGene254887
GENETestsZDHHC23
Target ValidationZDHHC23
Huge Navigator ZDHHC23 [HugePedia]
snp3D : Map Gene to Disease254887
BioCentury BCIQZDHHC23
ClinGenZDHHC23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254887
Chemical/Pharm GKB GenePA134960347
Clinical trialZDHHC23
Miscellaneous
canSAR (ICR)ZDHHC23 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZDHHC23
EVEXZDHHC23
GoPubMedZDHHC23
iHOPZDHHC23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:09:27 CET 2017

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