Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZDHHC3 (zinc finger DHHC-type containing 3)

Identity

Alias_symbol (synonym)ZNF373
GODZ
Other aliasDHHC-3
DHHC3
HGNC (Hugo) ZDHHC3
LocusID (NCBI) 51304
Atlas_Id 52925
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 44915261 and ends at 44976182 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PARVA (11p15.3) / ZDHHC3 (3p21.31)ZDHHC3 (3p21.31) / C2orf72 (2q37.1)ZDHHC3 (3p21.31) / NOS2 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZDHHC3   18470
Cards
Entrez_Gene (NCBI)ZDHHC3  51304  zinc finger DHHC-type containing 3
AliasesDHHC-3; DHHC3; GODZ; ZNF373
GeneCards (Weizmann)ZDHHC3
Ensembl hg19 (Hinxton)ENSG00000163812 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163812 [Gene_View]  chr3:44915261-44976182 [Contig_View]  ZDHHC3 [Vega]
ICGC DataPortalENSG00000163812
TCGA cBioPortalZDHHC3
AceView (NCBI)ZDHHC3
Genatlas (Paris)ZDHHC3
WikiGenes51304
SOURCE (Princeton)ZDHHC3
Genetics Home Reference (NIH)ZDHHC3
Genomic and cartography
GoldenPath hg38 (UCSC)ZDHHC3  -     chr3:44915261-44976182 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZDHHC3  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblZDHHC3 - 3p21.31 [CytoView hg19]  ZDHHC3 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIZDHHC3 [Mapview hg19]  ZDHHC3 [Mapview hg38]
OMIM617150   
Gene and transcription
Genbank (Entrez)AA778122 AF052182 AF247703 AF441791 AK000216
RefSeq transcript (Entrez)NM_001135179 NM_001135180 NM_001330761 NM_001349376 NM_001349377 NM_001349378 NM_001349379 NM_001349380 NM_001349381 NM_016598
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZDHHC3
Cluster EST : UnigeneHs.61430 [ NCBI ]
CGAP (NCI)Hs.61430
Alternative Splicing GalleryENSG00000163812
Gene ExpressionZDHHC3 [ NCBI-GEO ]   ZDHHC3 [ EBI - ARRAY_EXPRESS ]   ZDHHC3 [ SEEK ]   ZDHHC3 [ MEM ]
Gene Expression Viewer (FireBrowse)ZDHHC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51304
GTEX Portal (Tissue expression)ZDHHC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYG2
Splice isoforms : SwissVarQ9NYG2
PhosPhoSitePlusQ9NYG2
Domaine pattern : Prosite (Expaxy)DHHC (PS50216)   
Domains : Interpro (EBI)Palmitoyltrfase_DHHC   
Domain families : Pfam (Sanger)zf-DHHC (PF01529)   
Domain families : Pfam (NCBI)pfam01529   
Conserved Domain (NCBI)ZDHHC3
DMDM Disease mutations51304
Blocks (Seattle)ZDHHC3
SuperfamilyQ9NYG2
Human Protein AtlasENSG00000163812
Peptide AtlasQ9NYG2
HPRD15718
IPIIPI00009895   IPI00216069   IPI00909713   IPI00924723   IPI00925806   IPI00927037   IPI00926368   IPI00925649   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYG2
IntAct (EBI)Q9NYG2
FunCoupENSG00000163812
BioGRIDZDHHC3
STRING (EMBL)ZDHHC3
ZODIACZDHHC3
Ontologies - Pathways
QuickGOQ9NYG2
Ontology : AmiGOGolgi membrane  Golgi apparatus  protein targeting  membrane  integral component of membrane  palmitoyltransferase activity  protein palmitoylation  protein-cysteine S-palmitoyltransferase activity  
Ontology : EGO-EBIGolgi membrane  Golgi apparatus  protein targeting  membrane  integral component of membrane  palmitoyltransferase activity  protein palmitoylation  protein-cysteine S-palmitoyltransferase activity  
NDEx NetworkZDHHC3
Atlas of Cancer Signalling NetworkZDHHC3
Wikipedia pathwaysZDHHC3
Orthology - Evolution
OrthoDB51304
GeneTree (enSembl)ENSG00000163812
Phylogenetic Trees/Animal Genes : TreeFamZDHHC3
HOVERGENQ9NYG2
HOGENOMQ9NYG2
Homologs : HomoloGeneZDHHC3
Homology/Alignments : Family Browser (UCSC)ZDHHC3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZDHHC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZDHHC3
dbVarZDHHC3
ClinVarZDHHC3
1000_GenomesZDHHC3 
Exome Variant ServerZDHHC3
ExAC (Exome Aggregation Consortium)ZDHHC3 (select the gene name)
Genetic variants : HAPMAP51304
Genomic Variants (DGV)ZDHHC3 [DGVbeta]
DECIPHERZDHHC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZDHHC3 
Mutations
ICGC Data PortalZDHHC3 
TCGA Data PortalZDHHC3 
Broad Tumor PortalZDHHC3
OASIS PortalZDHHC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZDHHC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZDHHC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZDHHC3
DgiDB (Drug Gene Interaction Database)ZDHHC3
DoCM (Curated mutations)ZDHHC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZDHHC3 (select a term)
intoGenZDHHC3
Cancer3DZDHHC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617150   
Orphanet
MedgenZDHHC3
Genetic Testing Registry ZDHHC3
NextProtQ9NYG2 [Medical]
TSGene51304
GENETestsZDHHC3
Huge Navigator ZDHHC3 [HugePedia]
snp3D : Map Gene to Disease51304
BioCentury BCIQZDHHC3
ClinGenZDHHC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51304
Chemical/Pharm GKB GenePA38544
Clinical trialZDHHC3
Miscellaneous
canSAR (ICR)ZDHHC3 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZDHHC3
EVEXZDHHC3
GoPubMedZDHHC3
iHOPZDHHC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:44:40 CEST 2017

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