Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZDHHC4 (zinc finger DHHC-type containing 4)

Identity

Alias_symbol (synonym)FLJ10479
ZNF374
Other alias
HGNC (Hugo) ZDHHC4
LocusID (NCBI) 55146
Atlas_Id 75915
Location 7p22.1  [Link to chromosome band 7p22]
Location_base_pair Starts at 6577434 and ends at 6588979 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZDHHC4 (7p22.1) / ZDHHC4 (7p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZDHHC4   18471
Cards
Entrez_Gene (NCBI)ZDHHC4  55146  zinc finger DHHC-type containing 4
AliasesZNF374
GeneCards (Weizmann)ZDHHC4
Ensembl hg19 (Hinxton)ENSG00000136247 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136247 [Gene_View]  chr7:6577434-6588979 [Contig_View]  ZDHHC4 [Vega]
ICGC DataPortalENSG00000136247
TCGA cBioPortalZDHHC4
AceView (NCBI)ZDHHC4
Genatlas (Paris)ZDHHC4
WikiGenes55146
SOURCE (Princeton)ZDHHC4
Genetics Home Reference (NIH)ZDHHC4
Genomic and cartography
GoldenPath hg38 (UCSC)ZDHHC4  -     chr7:6577434-6588979 +  7p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZDHHC4  -     7p22.1   [Description]    (hg19-Feb_2009)
EnsemblZDHHC4 - 7p22.1 [CytoView hg19]  ZDHHC4 - 7p22.1 [CytoView hg38]
Mapping of homologs : NCBIZDHHC4 [Mapview hg19]  ZDHHC4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF201931 AK001341 AK223532 AK308971 AL136674
RefSeq transcript (Entrez)NM_001134387 NM_001134388 NM_001134389 NM_018106
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZDHHC4
Cluster EST : UnigeneHs.5268 [ NCBI ]
CGAP (NCI)Hs.5268
Alternative Splicing GalleryENSG00000136247
Gene ExpressionZDHHC4 [ NCBI-GEO ]   ZDHHC4 [ EBI - ARRAY_EXPRESS ]   ZDHHC4 [ SEEK ]   ZDHHC4 [ MEM ]
Gene Expression Viewer (FireBrowse)ZDHHC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55146
GTEX Portal (Tissue expression)ZDHHC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPG8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPG8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPG8
Splice isoforms : SwissVarQ9NPG8
Catalytic activity : Enzyme2.3.1.225 [ Enzyme-Expasy ]   2.3.1.2252.3.1.225 [ IntEnz-EBI ]   2.3.1.225 [ BRENDA ]   2.3.1.225 [ KEGG ]   
PhosPhoSitePlusQ9NPG8
Domaine pattern : Prosite (Expaxy)DHHC (PS50216)   
Domains : Interpro (EBI)Palmitoyltrfase_DHHC   
Domain families : Pfam (Sanger)zf-DHHC (PF01529)   
Domain families : Pfam (NCBI)pfam01529   
Conserved Domain (NCBI)ZDHHC4
DMDM Disease mutations55146
Blocks (Seattle)ZDHHC4
SuperfamilyQ9NPG8
Human Protein AtlasENSG00000136247
Peptide AtlasQ9NPG8
HPRD15719
IPIIPI00018218   IPI00947234   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPG8
IntAct (EBI)Q9NPG8
FunCoupENSG00000136247
BioGRIDZDHHC4
STRING (EMBL)ZDHHC4
ZODIACZDHHC4
Ontologies - Pathways
QuickGOQ9NPG8
Ontology : AmiGOGolgi apparatus  integral component of membrane  protein-cysteine S-palmitoyltransferase activity  
Ontology : EGO-EBIGolgi apparatus  integral component of membrane  protein-cysteine S-palmitoyltransferase activity  
NDEx NetworkZDHHC4
Atlas of Cancer Signalling NetworkZDHHC4
Wikipedia pathwaysZDHHC4
Orthology - Evolution
OrthoDB55146
GeneTree (enSembl)ENSG00000136247
Phylogenetic Trees/Animal Genes : TreeFamZDHHC4
HOVERGENQ9NPG8
HOGENOMQ9NPG8
Homologs : HomoloGeneZDHHC4
Homology/Alignments : Family Browser (UCSC)ZDHHC4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZDHHC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZDHHC4
dbVarZDHHC4
ClinVarZDHHC4
1000_GenomesZDHHC4 
Exome Variant ServerZDHHC4
ExAC (Exome Aggregation Consortium)ZDHHC4 (select the gene name)
Genetic variants : HAPMAP55146
Genomic Variants (DGV)ZDHHC4 [DGVbeta]
DECIPHERZDHHC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZDHHC4 
Mutations
ICGC Data PortalZDHHC4 
TCGA Data PortalZDHHC4 
Broad Tumor PortalZDHHC4
OASIS PortalZDHHC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZDHHC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZDHHC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZDHHC4
DgiDB (Drug Gene Interaction Database)ZDHHC4
DoCM (Curated mutations)ZDHHC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZDHHC4 (select a term)
intoGenZDHHC4
Cancer3DZDHHC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZDHHC4
Genetic Testing Registry ZDHHC4
NextProtQ9NPG8 [Medical]
TSGene55146
GENETestsZDHHC4
Target ValidationZDHHC4
Huge Navigator ZDHHC4 [HugePedia]
snp3D : Map Gene to Disease55146
BioCentury BCIQZDHHC4
ClinGenZDHHC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55146
Chemical/Pharm GKB GenePA38337
Clinical trialZDHHC4
Miscellaneous
canSAR (ICR)ZDHHC4 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZDHHC4
EVEXZDHHC4
GoPubMedZDHHC4
iHOPZDHHC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:49:39 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.