Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZDHHC7 (zinc finger DHHC-type containing 7)

Identity

Alias_symbol (synonym)FLJ10792
ZNF370
FLJ20279
SERZ-B
SERZ1
Other aliasDHHC7
HGNC (Hugo) ZDHHC7
LocusID (NCBI) 55625
Atlas_Id 54056
Location 16q24.1  [Link to chromosome band 16q24]
Location_base_pair Starts at 85008067 and ends at 85045141 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ATF4 (22q13.1) / ZDHHC7 (16q24.1)KMT2A (11q23.3) / ZDHHC7 (16q24.1)USP10 (16q24.1) / ZDHHC7 (16q24.1)
USP32 (17q23.1) / ZDHHC7 (16q24.1)ZDHHC7 (16q24.1) / ABCB9 (12q24.31)ZDHHC7 (16q24.1) / RPL23 (17q12)
ZDHHC7 (16q24.1) / USP10 (16q24.1)MLL ZDHHC7 16q24.1ZDHHC7 16q24.1 / USP10 16q24.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Prostate tumors: an overview


External links

Nomenclature
HGNC (Hugo)ZDHHC7   18459
Cards
Entrez_Gene (NCBI)ZDHHC7  55625  zinc finger DHHC-type containing 7
AliasesDHHC7; SERZ-B; SERZ1; ZNF370
GeneCards (Weizmann)ZDHHC7
Ensembl hg19 (Hinxton)ENSG00000153786 [Gene_View]  chr16:85008067-85045141 [Contig_View]  ZDHHC7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000153786 [Gene_View]  chr16:85008067-85045141 [Contig_View]  ZDHHC7 [Vega]
ICGC DataPortalENSG00000153786
TCGA cBioPortalZDHHC7
AceView (NCBI)ZDHHC7
Genatlas (Paris)ZDHHC7
WikiGenes55625
SOURCE (Princeton)ZDHHC7
Genetics Home Reference (NIH)ZDHHC7
Genomic and cartography
GoldenPath hg19 (UCSC)ZDHHC7  -     chr16:85008067-85045141 -  16q24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZDHHC7  -     16q24.1   [Description]    (hg38-Dec_2013)
EnsemblZDHHC7 - 16q24.1 [CytoView hg19]  ZDHHC7 - 16q24.1 [CytoView hg38]
Mapping of homologs : NCBIZDHHC7 [Mapview hg19]  ZDHHC7 [Mapview hg38]
OMIM614604   
Gene and transcription
Genbank (Entrez)AK000286 AK001654 AK023428 AK130081 AK225768
RefSeq transcript (Entrez)NM_001145548 NM_017740
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)ZDHHC7
Cluster EST : UnigeneHs.723447 [ NCBI ]
CGAP (NCI)Hs.723447
Alternative Splicing GalleryENSG00000153786
Gene ExpressionZDHHC7 [ NCBI-GEO ]   ZDHHC7 [ EBI - ARRAY_EXPRESS ]   ZDHHC7 [ SEEK ]   ZDHHC7 [ MEM ]
Gene Expression Viewer (FireBrowse)ZDHHC7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55625
GTEX Portal (Tissue expression)ZDHHC7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXF8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXF8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXF8
Splice isoforms : SwissVarQ9NXF8
PhosPhoSitePlusQ9NXF8
Domaine pattern : Prosite (Expaxy)ZF_DHHC (PS50216)   
Domains : Interpro (EBI)Znf_DHHC_palmitoyltrfase   
Domain families : Pfam (Sanger)zf-DHHC (PF01529)   
Domain families : Pfam (NCBI)pfam01529   
Conserved Domain (NCBI)ZDHHC7
DMDM Disease mutations55625
Blocks (Seattle)ZDHHC7
SuperfamilyQ9NXF8
Human Protein AtlasENSG00000153786
Peptide AtlasQ9NXF8
HPRD15722
IPIIPI00015608   IPI00221179   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXF8
IntAct (EBI)Q9NXF8
FunCoupENSG00000153786
BioGRIDZDHHC7
STRING (EMBL)ZDHHC7
ZODIACZDHHC7
Ontologies - Pathways
QuickGOQ9NXF8
Ontology : AmiGOGolgi membrane  nucleus  nucleoplasm  nucleolus  Golgi apparatus  zinc ion binding  integral component of membrane  palmitoyltransferase activity  peptidyl-L-cysteine S-palmitoylation  protein palmitoylation  protein-cysteine S-palmitoyltransferase activity  intracellular membrane-bounded organelle  
Ontology : EGO-EBIGolgi membrane  nucleus  nucleoplasm  nucleolus  Golgi apparatus  zinc ion binding  integral component of membrane  palmitoyltransferase activity  peptidyl-L-cysteine S-palmitoylation  protein palmitoylation  protein-cysteine S-palmitoyltransferase activity  intracellular membrane-bounded organelle  
NDEx NetworkZDHHC7
Atlas of Cancer Signalling NetworkZDHHC7
Wikipedia pathwaysZDHHC7
Orthology - Evolution
OrthoDB55625
GeneTree (enSembl)ENSG00000153786
Phylogenetic Trees/Animal Genes : TreeFamZDHHC7
HOVERGENQ9NXF8
HOGENOMQ9NXF8
Homologs : HomoloGeneZDHHC7
Homology/Alignments : Family Browser (UCSC)ZDHHC7
Gene fusions - Rearrangements
Fusion : MitelmanUSP10/ZDHHC7 [16q24.1/16q24.1]  [del(16)(q24q24)]  
Fusion : MitelmanZDHHC7/ABCB9 [16q24.1/12q24.31]  [t(12;16)(q24;q24)]  
Fusion : MitelmanZDHHC7/USP10 [16q24.1/16q24.1]  [t(16;16)(q24;q24)]  
Fusion: TCGAMLL ZDHHC7 16q24.1 SKCM
Fusion: TCGAZDHHC7 16q24.1 USP10 16q24.1 SKCM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZDHHC7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZDHHC7
dbVarZDHHC7
ClinVarZDHHC7
1000_GenomesZDHHC7 
Exome Variant ServerZDHHC7
ExAC (Exome Aggregation Consortium)ZDHHC7 (select the gene name)
Genetic variants : HAPMAP55625
Genomic Variants (DGV)ZDHHC7 [DGVbeta]
DECIPHER (Syndromes)16:85008067-85045141  ENSG00000153786
CONAN: Copy Number AnalysisZDHHC7 
Mutations
ICGC Data PortalZDHHC7 
TCGA Data PortalZDHHC7 
Broad Tumor PortalZDHHC7
OASIS PortalZDHHC7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZDHHC7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZDHHC7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZDHHC7
DgiDB (Drug Gene Interaction Database)ZDHHC7
DoCM (Curated mutations)ZDHHC7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZDHHC7 (select a term)
intoGenZDHHC7
Cancer3DZDHHC7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614604   
Orphanet
MedgenZDHHC7
Genetic Testing Registry ZDHHC7
NextProtQ9NXF8 [Medical]
TSGene55625
GENETestsZDHHC7
Huge Navigator ZDHHC7 [HugePedia]
snp3D : Map Gene to Disease55625
BioCentury BCIQZDHHC7
ClinGenZDHHC7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55625
Chemical/Pharm GKB GenePA38335
Clinical trialZDHHC7
Miscellaneous
canSAR (ICR)ZDHHC7 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZDHHC7
EVEXZDHHC7
GoPubMedZDHHC7
iHOPZDHHC7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:34:45 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.