Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZEB1 (zinc finger E-box binding homeobox 1)

Identity

Alias_namesTCF8
PPCD3
transcription factor 8 (represses interleukin 2 expression)
posterior polymorphous corneal dystrophy 3
Alias_symbol (synonym)BZP
ZEB
AREB6
NIL-2-A
Zfhep
Zfhx1a
FECD6
Other aliasDELTAEF1
NIL2A
ZFHEP
ZFHX1A
HGNC (Hugo) ZEB1
LocusID (NCBI) 6935
Atlas_Id 46166
Location 10p11.22  [Link to chromosome band 10p11]
Location_base_pair Starts at 31610064 and ends at 31818742 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ACBD5 (10p12.1) / ZEB1 (10p11.22)ECT2L (6q24.1) / ZEB1 (10p11.22)EPC1 (10p11.22) / ZEB1 (10p11.22)
MIR548N (2q31.2) / ZEB1 (10p11.22)RAB31 (18p11.22) / ZEB1 (10p11.22)ZEB1 (10p11.22) / BMI1 (10p12.2)
ZEB1 (10p11.22) / SIK1 (21q22.3)ZEB1 (10p11.22) / WAC (10p12.1)ZEB1 (10p11.22) / ZEB1 (10p11.22)
ZEB1 (10p11.22) / ZNF438 (10p11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZEB1   11642
Cards
Entrez_Gene (NCBI)ZEB1  6935  zinc finger E-box binding homeobox 1
AliasesAREB6; BZP; DELTAEF1; FECD6; 
NIL2A; PPCD3; TCF8; ZFHEP; ZFHX1A
GeneCards (Weizmann)ZEB1
Ensembl hg19 (Hinxton)ENSG00000148516 [Gene_View]  chr10:31610064-31818742 [Contig_View]  ZEB1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000148516 [Gene_View]  chr10:31610064-31818742 [Contig_View]  ZEB1 [Vega]
ICGC DataPortalENSG00000148516
TCGA cBioPortalZEB1
AceView (NCBI)ZEB1
Genatlas (Paris)ZEB1
WikiGenes6935
SOURCE (Princeton)ZEB1
Genetics Home Reference (NIH)ZEB1
Genomic and cartography
GoldenPath hg19 (UCSC)ZEB1  -     chr10:31610064-31818742 +  10p11.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZEB1  -     10p11.22   [Description]    (hg38-Dec_2013)
EnsemblZEB1 - 10p11.22 [CytoView hg19]  ZEB1 - 10p11.22 [CytoView hg38]
Mapping of homologs : NCBIZEB1 [Mapview hg19]  ZEB1 [Mapview hg38]
OMIM189909   609141   613270   
Gene and transcription
Genbank (Entrez)AI086650 AK091478 AK294775 AK296244 AK299541
RefSeq transcript (Entrez)NM_001128128 NM_001174093 NM_001174094 NM_001174095 NM_001174096 NM_030751
RefSeq genomic (Entrez)NC_000010 NC_018921 NG_017048 NT_008705 NW_004929370
Consensus coding sequences : CCDS (NCBI)ZEB1
Cluster EST : UnigeneHs.124503 [ NCBI ]
CGAP (NCI)Hs.124503
Alternative Splicing GalleryENSG00000148516
Gene ExpressionZEB1 [ NCBI-GEO ]   ZEB1 [ EBI - ARRAY_EXPRESS ]   ZEB1 [ SEEK ]   ZEB1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZEB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6935
GTEX Portal (Tissue expression)ZEB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP37275   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP37275  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP37275
Splice isoforms : SwissVarP37275
PhosPhoSitePlusP37275
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Di19_Zn_binding_dom    Homeobox_dom    Homeodomain-like    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)Homeobox (PF00046)    zf-Di19 (PF05605)   
Domain families : Pfam (NCBI)pfam00046    pfam05605   
Domain families : Smart (EMBL)HOX (SM00389)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZEB1
DMDM Disease mutations6935
Blocks (Seattle)ZEB1
PDB (SRS)2.00E+19   
PDB (PDBSum)2.00E+19   
PDB (IMB)2.00E+19   
PDB (RSDB)2.00E+19   
Structural Biology KnowledgeBase2.00E+19   
SCOP (Structural Classification of Proteins)2.00E+19   
CATH (Classification of proteins structures)2.00E+19   
SuperfamilyP37275
Human Protein AtlasENSG00000148516
Peptide AtlasP37275
HPRD01798
IPIIPI00375505   IPI00909527   IPI01015365   IPI01009961   IPI01014891   IPI01009478   IPI00942556   IPI00956719   IPI00956700   IPI00477152   IPI00514481   
Protein Interaction databases
DIP (DOE-UCLA)P37275
IntAct (EBI)P37275
FunCoupENSG00000148516
BioGRIDZEB1
STRING (EMBL)ZEB1
ZODIACZEB1
Ontologies - Pathways
QuickGOP37275
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding  chromatin binding  transcription factor activity, sequence-specific DNA binding  transcription coactivator activity  transcription corepressor activity  protein binding  nucleus  nucleoplasm  transcription factor complex  cytoplasm  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  immune response  pattern specification process  central nervous system development  transcription factor binding  zinc ion binding  cell proliferation  negative regulation of cell proliferation  regulation of mesenchymal cell proliferation  regulation of transforming growth factor beta receptor signaling pathway  negative regulation of epithelial cell differentiation  regulation of T cell differentiation in thymus  positive regulation of neuron differentiation  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  embryonic camera-type eye morphogenesis  embryonic skeletal system morphogenesis  semicircular canal morphogenesis  regulation of smooth muscle cell differentiation  cartilage development  E-box binding  cellular response to amino acid stimulus  cochlea morphogenesis  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding  chromatin binding  transcription factor activity, sequence-specific DNA binding  transcription coactivator activity  transcription corepressor activity  protein binding  nucleus  nucleoplasm  transcription factor complex  cytoplasm  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  immune response  pattern specification process  central nervous system development  transcription factor binding  zinc ion binding  cell proliferation  negative regulation of cell proliferation  regulation of mesenchymal cell proliferation  regulation of transforming growth factor beta receptor signaling pathway  negative regulation of epithelial cell differentiation  regulation of T cell differentiation in thymus  positive regulation of neuron differentiation  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  embryonic camera-type eye morphogenesis  embryonic skeletal system morphogenesis  semicircular canal morphogenesis  regulation of smooth muscle cell differentiation  cartilage development  E-box binding  cellular response to amino acid stimulus  cochlea morphogenesis  
Pathways : BIOCARTASUMOylation as a mechanism to modulate CtBP-dependent gene responses [Genes]   
Pathways : KEGGTranscriptional misregulation in cancer    MicroRNAs in cancer   
NDEx NetworkZEB1
Atlas of Cancer Signalling NetworkZEB1
Wikipedia pathwaysZEB1
Orthology - Evolution
OrthoDB6935
GeneTree (enSembl)ENSG00000148516
Phylogenetic Trees/Animal Genes : TreeFamZEB1
HOVERGENP37275
HOGENOMP37275
Homologs : HomoloGeneZEB1
Homology/Alignments : Family Browser (UCSC)ZEB1
Gene fusions - Rearrangements
Fusion : MitelmanZEB1/BMI1 [10p11.22/10p12.2]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZEB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZEB1
dbVarZEB1
ClinVarZEB1
1000_GenomesZEB1 
Exome Variant ServerZEB1
ExAC (Exome Aggregation Consortium)ZEB1 (select the gene name)
Genetic variants : HAPMAP6935
Genomic Variants (DGV)ZEB1 [DGVbeta]
DECIPHER (Syndromes)10:31610064-31818742  ENSG00000148516
CONAN: Copy Number AnalysisZEB1 
Mutations
ICGC Data PortalZEB1 
TCGA Data PortalZEB1 
Broad Tumor PortalZEB1
OASIS PortalZEB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZEB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZEB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZEB1
DgiDB (Drug Gene Interaction Database)ZEB1
DoCM (Curated mutations)ZEB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZEB1 (select a term)
intoGenZEB1
Cancer3DZEB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM189909    609141    613270   
Orphanet13990    13991   
MedgenZEB1
Genetic Testing Registry ZEB1
NextProtP37275 [Medical]
TSGene6935
GENETestsZEB1
Huge Navigator ZEB1 [HugePedia]
snp3D : Map Gene to Disease6935
BioCentury BCIQZEB1
ClinGenZEB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6935
Chemical/Pharm GKB GenePA162409589
Clinical trialZEB1
Miscellaneous
canSAR (ICR)ZEB1 (select the gene name)
Probes
Litterature
PubMed227 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZEB1
EVEXZEB1
GoPubMedZEB1
iHOPZEB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 30 15:25:29 CEST 2017

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