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ZER1 (zyg-11 related cell cycle regulator)

Identity

Alias_namesC9orf60
ZYG11BL
chromosome 9 open reading frame 60
zyg-11 homolog B (C. elegans)-like
zer-1 homolog (C. elegans)
Alias_symbol (synonym)ZYG
Hzyg
Other alias
HGNC (Hugo) ZER1
LocusID (NCBI) 10444
Atlas_Id 75921
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 128729788 and ends at 128771934 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM129B (9q33.3) / ZER1 (9q34.11)LAMP1 (13q34) / ZER1 (9q34.11)PHYHD1 (9q34.11) / ZER1 (9q34.11)
WDR34 (9q34.11) / ZER1 (9q34.11)ZER1 (9q34.11) / ATP1A1 (1p13.1)ZER1 (9q34.11) / TBC1D13 (9q34.11)
PHYHD1 ZER1WDR34 ZER1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZER1   30960
Cards
Entrez_Gene (NCBI)ZER1  10444  zyg-11 related cell cycle regulator
AliasesC9orf60; ZYG; ZYG11BL
GeneCards (Weizmann)ZER1
Ensembl hg19 (Hinxton)ENSG00000160445 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160445 [Gene_View]  chr9:128729788-128771934 [Contig_View]  ZER1 [Vega]
ICGC DataPortalENSG00000160445
TCGA cBioPortalZER1
AceView (NCBI)ZER1
Genatlas (Paris)ZER1
WikiGenes10444
SOURCE (Princeton)ZER1
Genetics Home Reference (NIH)ZER1
Genomic and cartography
GoldenPath hg38 (UCSC)ZER1  -     chr9:128729788-128771934 -  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZER1  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblZER1 - 9q34.11 [CytoView hg19]  ZER1 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIZER1 [Mapview hg19]  ZER1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK314911 BC001447 BC033884 BC052563 HY170548
RefSeq transcript (Entrez)NM_006336
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZER1
Cluster EST : UnigeneHs.744180 [ NCBI ]
CGAP (NCI)Hs.744180
Alternative Splicing GalleryENSG00000160445
Gene ExpressionZER1 [ NCBI-GEO ]   ZER1 [ EBI - ARRAY_EXPRESS ]   ZER1 [ SEEK ]   ZER1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZER1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10444
GTEX Portal (Tissue expression)ZER1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7L7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7L7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7L7
Splice isoforms : SwissVarQ7Z7L7
PhosPhoSitePlusQ7Z7L7
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Armadillo    L_dom-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ARM (SM00185)  
Conserved Domain (NCBI)ZER1
DMDM Disease mutations10444
Blocks (Seattle)ZER1
SuperfamilyQ7Z7L7
Human Protein AtlasENSG00000160445
Peptide AtlasQ7Z7L7
HPRD10802
IPIIPI00376483   IPI00641677   IPI00642228   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7L7
IntAct (EBI)Q7Z7L7
FunCoupENSG00000160445
BioGRIDZER1
STRING (EMBL)ZER1
ZODIACZER1
Ontologies - Pathways
QuickGOQ7Z7L7
Ontology : AmiGOubiquitin-protein transferase activity  protein ubiquitination  Cul2-RING ubiquitin ligase complex  regulation of ubiquitin-protein transferase activity  
Ontology : EGO-EBIubiquitin-protein transferase activity  protein ubiquitination  Cul2-RING ubiquitin ligase complex  regulation of ubiquitin-protein transferase activity  
NDEx NetworkZER1
Atlas of Cancer Signalling NetworkZER1
Wikipedia pathwaysZER1
Orthology - Evolution
OrthoDB10444
GeneTree (enSembl)ENSG00000160445
Phylogenetic Trees/Animal Genes : TreeFamZER1
HOVERGENQ7Z7L7
HOGENOMQ7Z7L7
Homologs : HomoloGeneZER1
Homology/Alignments : Family Browser (UCSC)ZER1
Gene fusions - Rearrangements
Fusion: TCGAPHYHD1 ZER1
Fusion: TCGAWDR34 ZER1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZER1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZER1
dbVarZER1
ClinVarZER1
1000_GenomesZER1 
Exome Variant ServerZER1
ExAC (Exome Aggregation Consortium)ZER1 (select the gene name)
Genetic variants : HAPMAP10444
Genomic Variants (DGV)ZER1 [DGVbeta]
DECIPHERZER1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZER1 
Mutations
ICGC Data PortalZER1 
TCGA Data PortalZER1 
Broad Tumor PortalZER1
OASIS PortalZER1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZER1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZER1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZER1
DgiDB (Drug Gene Interaction Database)ZER1
DoCM (Curated mutations)ZER1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZER1 (select a term)
intoGenZER1
Cancer3DZER1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZER1
Genetic Testing Registry ZER1
NextProtQ7Z7L7 [Medical]
TSGene10444
GENETestsZER1
Target ValidationZER1
Huge Navigator ZER1 [HugePedia]
snp3D : Map Gene to Disease10444
BioCentury BCIQZER1
ClinGenZER1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10444
Chemical/Pharm GKB GenePA162409637
Clinical trialZER1
Miscellaneous
canSAR (ICR)ZER1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZER1
EVEXZER1
GoPubMedZER1
iHOPZER1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:15 CEST 2017

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