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ZFAND3 (zinc finger AN1-type containing 3)

Identity

Alias (NCBI)TEX27
HGNC (Hugo) ZFAND3
HGNC Alias symbFLJ13222
HGNC Previous nameTEX27
HGNC Previous nametestis expressed sequence 27
 zinc finger, AN1-type domain 3
LocusID (NCBI) 60685
Atlas_Id 54796
Location 6p21.2  [Link to chromosome band 6p21]
Location_base_pair Starts at 37819727 and ends at 38154623 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AKAP2 (9q31.3) / ZFAND3 (6p21.2)ARNT2 (15q25.1) / ZFAND3 (6p21.2)AXL (19q13.2) / ZFAND3 (6p21.2)
BRPF3 (6p21.31) / ZFAND3 (6p21.2)CDK19 (6q21) / ZFAND3 (6p21.2)CECR2 (22q11.1) / ZFAND3 (6p21.2)
HMBOX1 (8p21.1) / ZFAND3 (6p21.2)MARCH6 (5p15.2) / ZFAND3 (6p21.2)SLC25A16 (10q21.3) / ZFAND3 (6p21.2)
ZFAND3 (6p21.2) / AL353597.1 ()ZFAND3 (6p21.2) / DNAH8 (6p21.2)ZFAND3 (6p21.2) / KCTD20 (6p21.31)
ZFAND3 (6p21.2) / RNF8 (6p21.2)ZFAND3 (6p21.2) / SLC25A37 (8p21.2)ZFAND3 (6p21.2) / TBC1D5 (3p24.3)
ARNT2 15q25.1 / ZFAND3 6p21.2BRPF3 6p21.31 / ZFAND3 6p21.2CDK19 6q21 / ZFAND3 6p21.2
ZFAND3 6p21.2 AL353597.1ZFAND3 6p21.2 / KCTD20 6p21.31ZFAND3 6p21.2 / RNF8 6p21.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZFAND3   18019
Cards
Entrez_Gene (NCBI)ZFAND3    zinc finger AN1-type containing 3
AliasesTEX27
GeneCards (Weizmann)ZFAND3
Ensembl hg19 (Hinxton)ENSG00000156639 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156639 [Gene_View]  ENSG00000156639 [Sequence]  chr6:37819727-38154623 [Contig_View]  ZFAND3 [Vega]
ICGC DataPortalENSG00000156639
TCGA cBioPortalZFAND3
AceView (NCBI)ZFAND3
Genatlas (Paris)ZFAND3
SOURCE (Princeton)ZFAND3
Genetics Home Reference (NIH)ZFAND3
Genomic and cartography
GoldenPath hg38 (UCSC)ZFAND3  -     chr6:37819727-38154623 +  6p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFAND3  -     6p21.2   [Description]    (hg19-Feb_2009)
GoldenPathZFAND3 - 6p21.2 [CytoView hg19]  ZFAND3 - 6p21.2 [CytoView hg38]
ImmunoBaseENSG00000156639
Genome Data Viewer NCBIZFAND3 [Mapview hg19]  
OMIM607455   
Gene and transcription
Genbank (Entrez)AI817165 AK023284 AK310757 AL137302 AW023961
RefSeq transcript (Entrez)NM_021943
Consensus coding sequences : CCDS (NCBI)ZFAND3
Gene ExpressionZFAND3 [ NCBI-GEO ]   ZFAND3 [ EBI - ARRAY_EXPRESS ]   ZFAND3 [ SEEK ]   ZFAND3 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFAND3 [ Firebrowse - Broad ]
GenevisibleExpression of ZFAND3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60685
GTEX Portal (Tissue expression)ZFAND3
Human Protein AtlasENSG00000156639-ZFAND3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H8U3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H8U3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H8U3
PhosPhoSitePlusQ9H8U3
Domaine pattern : Prosite (Expaxy)ZF_A20 (PS51036)    ZF_AN1 (PS51039)   
Domains : Interpro (EBI)AN1-like_Znf    Znf_A20    Znf_AN1   
Domain families : Pfam (Sanger)zf-A20 (PF01754)    zf-AN1 (PF01428)   
Domain families : Pfam (NCBI)pfam01754    pfam01428   
Domain families : Smart (EMBL)ZnF_A20 (SM00259)  ZnF_AN1 (SM00154)  
Conserved Domain (NCBI)ZFAND3
PDB (RSDB)1X4W   
PDB Europe1X4W   
PDB (PDBSum)1X4W   
PDB (IMB)1X4W   
Structural Biology KnowledgeBase1X4W   
SCOP (Structural Classification of Proteins)1X4W   
CATH (Classification of proteins structures)1X4W   
SuperfamilyQ9H8U3
AlphaFold pdb e-kbQ9H8U3   
Human Protein Atlas [tissue]ENSG00000156639-ZFAND3 [tissue]
HPRD12121
Protein Interaction databases
DIP (DOE-UCLA)Q9H8U3
IntAct (EBI)Q9H8U3
BioGRIDZFAND3
STRING (EMBL)ZFAND3
ZODIACZFAND3
Ontologies - Pathways
QuickGOQ9H8U3
Ontology : AmiGODNA binding  protein binding  zinc ion binding  
Ontology : EGO-EBIDNA binding  protein binding  zinc ion binding  
NDEx NetworkZFAND3
Atlas of Cancer Signalling NetworkZFAND3
Wikipedia pathwaysZFAND3
Orthology - Evolution
OrthoDB60685
GeneTree (enSembl)ENSG00000156639
Phylogenetic Trees/Animal Genes : TreeFamZFAND3
Homologs : HomoloGeneZFAND3
Homology/Alignments : Family Browser (UCSC)ZFAND3
Gene fusions - Rearrangements
Fusion : MitelmanARNT2/ZFAND3 [15q25.1/6p21.2]  
Fusion : MitelmanBRPF3/ZFAND3 [6p21.31/6p21.2]  
Fusion : MitelmanCDK19/ZFAND3 [6q21/6p21.2]  
Fusion : MitelmanHMBOX1/ZFAND3 [8p21.1/6p21.2]  
Fusion : MitelmanZFAND3/DNAH8 [6p21.2/6p21.2]  
Fusion : MitelmanZFAND3/KCTD20 [6p21.2/6p21.31]  
Fusion : MitelmanZFAND3/RNF8 [6p21.2/6p21.2]  
Fusion : QuiverZFAND3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFAND3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFAND3
dbVarZFAND3
ClinVarZFAND3
MonarchZFAND3
1000_GenomesZFAND3 
Exome Variant ServerZFAND3
GNOMAD BrowserENSG00000156639
Varsome BrowserZFAND3
ACMGZFAND3 variants
VarityQ9H8U3
Genomic Variants (DGV)ZFAND3 [DGVbeta]
DECIPHERZFAND3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFAND3 
Mutations
ICGC Data PortalZFAND3 
TCGA Data PortalZFAND3 
Broad Tumor PortalZFAND3
OASIS PortalZFAND3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFAND3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZFAND3
Mutations and Diseases : HGMDZFAND3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZFAND3
DgiDB (Drug Gene Interaction Database)ZFAND3
DoCM (Curated mutations)ZFAND3
CIViC (Clinical Interpretations of Variants in Cancer)ZFAND3
Cancer3DZFAND3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607455   
Orphanet
DisGeNETZFAND3
MedgenZFAND3
Genetic Testing Registry ZFAND3
NextProtQ9H8U3 [Medical]
GENETestsZFAND3
Target ValidationZFAND3
Huge Navigator ZFAND3 [HugePedia]
ClinGenZFAND3
Clinical trials, drugs, therapy
MyCancerGenomeZFAND3
Protein Interactions : CTDZFAND3
Pharm GKB GenePA38277
PharosQ9H8U3
Clinical trialZFAND3
Miscellaneous
canSAR (ICR)ZFAND3
HarmonizomeZFAND3
DataMed IndexZFAND3
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZFAND3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:38:56 CEST 2021

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