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ZFAND4 (zinc finger AN1-type containing 4)

Identity

Alias_namesANUBL1
AN1, ubiquitin-like, homolog (Xenopus laevis)
zinc finger, AN1-type domain 4
Alias_symbol (synonym)FLJ40185
Other alias
HGNC (Hugo) ZFAND4
LocusID (NCBI) 93550
Atlas_Id 55653
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 45615501 and ends at 45672813 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NCK1 (3q22.3) / ZFAND4 (10q11.22)ZMYND11 (10p15.3) / ZFAND4 (10q11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZFAND4   23504
Cards
Entrez_Gene (NCBI)ZFAND4  93550  zinc finger AN1-type containing 4
AliasesANUBL1
GeneCards (Weizmann)ZFAND4
Ensembl hg19 (Hinxton)ENSG00000172671 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172671 [Gene_View]  chr10:45615501-45672813 [Contig_View]  ZFAND4 [Vega]
ICGC DataPortalENSG00000172671
TCGA cBioPortalZFAND4
AceView (NCBI)ZFAND4
Genatlas (Paris)ZFAND4
WikiGenes93550
SOURCE (Princeton)ZFAND4
Genetics Home Reference (NIH)ZFAND4
Genomic and cartography
GoldenPath hg38 (UCSC)ZFAND4  -     chr10:45615501-45672813 -  10q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFAND4  -     10q11.22   [Description]    (hg19-Feb_2009)
EnsemblZFAND4 - 10q11.22 [CytoView hg19]  ZFAND4 - 10q11.22 [CytoView hg38]
Mapping of homologs : NCBIZFAND4 [Mapview hg19]  ZFAND4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA813695 AF311324 AK090704 AK097504 AK097924
RefSeq transcript (Entrez)NM_001128324 NM_001282905 NM_001282906 NM_174890
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZFAND4
Cluster EST : UnigeneHs.659717 [ NCBI ]
CGAP (NCI)Hs.659717
Alternative Splicing GalleryENSG00000172671
Gene ExpressionZFAND4 [ NCBI-GEO ]   ZFAND4 [ EBI - ARRAY_EXPRESS ]   ZFAND4 [ SEEK ]   ZFAND4 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFAND4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93550
GTEX Portal (Tissue expression)ZFAND4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XD8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XD8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XD8
Splice isoforms : SwissVarQ86XD8
PhosPhoSitePlusQ86XD8
Domaine pattern : Prosite (Expaxy)UBIQUITIN_2 (PS50053)    ZF_AN1 (PS51039)   
Domains : Interpro (EBI)Ubiquitin    Ubiquitin-rel_dom    Ubiquitin_dom    Znf_AN1   
Domain families : Pfam (Sanger)ubiquitin (PF00240)    zf-AN1 (PF01428)   
Domain families : Pfam (NCBI)pfam00240    pfam01428   
Domain families : Smart (EMBL)UBQ (SM00213)  ZnF_AN1 (SM00154)  
Conserved Domain (NCBI)ZFAND4
DMDM Disease mutations93550
Blocks (Seattle)ZFAND4
SuperfamilyQ86XD8
Human Protein AtlasENSG00000172671
Peptide AtlasQ86XD8
HPRD16494
IPIIPI00549731   IPI01010112   IPI00828033   IPI00977621   IPI00477301   IPI00647520   
Protein Interaction databases
DIP (DOE-UCLA)Q86XD8
IntAct (EBI)Q86XD8
FunCoupENSG00000172671
BioGRIDZFAND4
STRING (EMBL)ZFAND4
ZODIACZFAND4
Ontologies - Pathways
QuickGOQ86XD8
Ontology : AmiGOzinc ion binding  
Ontology : EGO-EBIzinc ion binding  
NDEx NetworkZFAND4
Atlas of Cancer Signalling NetworkZFAND4
Wikipedia pathwaysZFAND4
Orthology - Evolution
OrthoDB93550
GeneTree (enSembl)ENSG00000172671
Phylogenetic Trees/Animal Genes : TreeFamZFAND4
HOVERGENQ86XD8
HOGENOMQ86XD8
Homologs : HomoloGeneZFAND4
Homology/Alignments : Family Browser (UCSC)ZFAND4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFAND4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFAND4
dbVarZFAND4
ClinVarZFAND4
1000_GenomesZFAND4 
Exome Variant ServerZFAND4
ExAC (Exome Aggregation Consortium)ZFAND4 (select the gene name)
Genetic variants : HAPMAP93550
Genomic Variants (DGV)ZFAND4 [DGVbeta]
DECIPHERZFAND4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFAND4 
Mutations
ICGC Data PortalZFAND4 
TCGA Data PortalZFAND4 
Broad Tumor PortalZFAND4
OASIS PortalZFAND4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFAND4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZFAND4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZFAND4
DgiDB (Drug Gene Interaction Database)ZFAND4
DoCM (Curated mutations)ZFAND4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFAND4 (select a term)
intoGenZFAND4
Cancer3DZFAND4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZFAND4
Genetic Testing Registry ZFAND4
NextProtQ86XD8 [Medical]
TSGene93550
GENETestsZFAND4
Target ValidationZFAND4
Huge Navigator ZFAND4 [HugePedia]
snp3D : Map Gene to Disease93550
BioCentury BCIQZFAND4
ClinGenZFAND4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93550
Chemical/Pharm GKB GenePA134976557
Clinical trialZFAND4
Miscellaneous
canSAR (ICR)ZFAND4 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFAND4
EVEXZFAND4
GoPubMedZFAND4
iHOPZFAND4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:03:27 CEST 2017

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