Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZFAND5 (zinc finger AN1-type containing 5)

Identity

Alias_namesZNF216
ZA20D2
zinc finger protein 216
zinc finger, A20 domain containing 2
zinc finger, AN1-type domain 5
Alias_symbol (synonym)ZFAND5A
Other alias
HGNC (Hugo) ZFAND5
LocusID (NCBI) 7763
Atlas_Id 75926
Location 9q21.13  [Link to chromosome band 9q21]
Location_base_pair Starts at 72351425 and ends at 72365247 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LOC100507412 (-) / ZFAND5 (9q21.13)MALAT1 (11q13.1) / ZFAND5 (9q21.13)PAFAH1B2 (11q23.3) / ZFAND5 (9q21.13)
USP30 (12q24.11) / ZFAND5 (9q21.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZFAND5   13008
Cards
Entrez_Gene (NCBI)ZFAND5  7763  zinc finger AN1-type containing 5
AliasesZA20D2; ZFAND5A; ZNF216
GeneCards (Weizmann)ZFAND5
Ensembl hg19 (Hinxton)ENSG00000107372 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107372 [Gene_View]  chr9:72351425-72365247 [Contig_View]  ZFAND5 [Vega]
ICGC DataPortalENSG00000107372
TCGA cBioPortalZFAND5
AceView (NCBI)ZFAND5
Genatlas (Paris)ZFAND5
WikiGenes7763
SOURCE (Princeton)ZFAND5
Genetics Home Reference (NIH)ZFAND5
Genomic and cartography
GoldenPath hg38 (UCSC)ZFAND5  -     chr9:72351425-72365247 -  9q21.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFAND5  -     9q21.13   [Description]    (hg19-Feb_2009)
EnsemblZFAND5 - 9q21.13 [CytoView hg19]  ZFAND5 - 9q21.13 [CytoView hg38]
Mapping of homologs : NCBIZFAND5 [Mapview hg19]  ZFAND5 [Mapview hg38]
OMIM604761   
Gene and transcription
Genbank (Entrez)AA837106 AF062346 AF062347 AI379933 AK025782
RefSeq transcript (Entrez)NM_001102420 NM_001102421 NM_001278243 NM_001278244 NM_001278245 NM_006007
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZFAND5
Cluster EST : UnigeneHs.406096 [ NCBI ]
CGAP (NCI)Hs.406096
Alternative Splicing GalleryENSG00000107372
Gene ExpressionZFAND5 [ NCBI-GEO ]   ZFAND5 [ EBI - ARRAY_EXPRESS ]   ZFAND5 [ SEEK ]   ZFAND5 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFAND5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7763
GTEX Portal (Tissue expression)ZFAND5
Human Protein AtlasENSG00000107372-ZFAND5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO76080   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO76080  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO76080
Splice isoforms : SwissVarO76080
PhosPhoSitePlusO76080
Domaine pattern : Prosite (Expaxy)ZF_A20 (PS51036)    ZF_AN1 (PS51039)   
Domains : Interpro (EBI)Znf_A20    Znf_AN1   
Domain families : Pfam (Sanger)zf-A20 (PF01754)    zf-AN1 (PF01428)   
Domain families : Pfam (NCBI)pfam01754    pfam01428   
Domain families : Smart (EMBL)ZnF_A20 (SM00259)  ZnF_AN1 (SM00154)  
Conserved Domain (NCBI)ZFAND5
DMDM Disease mutations7763
Blocks (Seattle)ZFAND5
SuperfamilyO76080
Human Protein Atlas [tissue]ENSG00000107372-ZFAND5 [tissue]
Peptide AtlasO76080
HPRD05302
IPIIPI00025622   IPI00514213   
Protein Interaction databases
DIP (DOE-UCLA)O76080
IntAct (EBI)O76080
FunCoupENSG00000107372
BioGRIDZFAND5
STRING (EMBL)ZFAND5
ZODIACZFAND5
Ontologies - Pathways
QuickGOO76080
Ontology : AmiGOin utero embryonic development  vasculature development  respiratory system process  molecular_function  DNA binding  protein binding  cellular_component  cytoplasm  biological_process  zinc ion binding  fibroblast migration  platelet-derived growth factor receptor signaling pathway  skeletal system morphogenesis  smooth muscle tissue development  face development  
Ontology : EGO-EBIin utero embryonic development  vasculature development  respiratory system process  molecular_function  DNA binding  protein binding  cellular_component  cytoplasm  biological_process  zinc ion binding  fibroblast migration  platelet-derived growth factor receptor signaling pathway  skeletal system morphogenesis  smooth muscle tissue development  face development  
NDEx NetworkZFAND5
Atlas of Cancer Signalling NetworkZFAND5
Wikipedia pathwaysZFAND5
Orthology - Evolution
OrthoDB7763
GeneTree (enSembl)ENSG00000107372
Phylogenetic Trees/Animal Genes : TreeFamZFAND5
HOVERGENO76080
HOGENOMO76080
Homologs : HomoloGeneZFAND5
Homology/Alignments : Family Browser (UCSC)ZFAND5
Gene fusions - Rearrangements
Fusion: Tumor Portal ZFAND5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFAND5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFAND5
dbVarZFAND5
ClinVarZFAND5
1000_GenomesZFAND5 
Exome Variant ServerZFAND5
ExAC (Exome Aggregation Consortium)ENSG00000107372
GNOMAD BrowserENSG00000107372
Genetic variants : HAPMAP7763
Genomic Variants (DGV)ZFAND5 [DGVbeta]
DECIPHERZFAND5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFAND5 
Mutations
ICGC Data PortalZFAND5 
TCGA Data PortalZFAND5 
Broad Tumor PortalZFAND5
OASIS PortalZFAND5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFAND5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZFAND5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZFAND5
DgiDB (Drug Gene Interaction Database)ZFAND5
DoCM (Curated mutations)ZFAND5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFAND5 (select a term)
intoGenZFAND5
Cancer3DZFAND5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604761   
Orphanet
MedgenZFAND5
Genetic Testing Registry ZFAND5
NextProtO76080 [Medical]
TSGene7763
GENETestsZFAND5
Target ValidationZFAND5
Huge Navigator ZFAND5 [HugePedia]
snp3D : Map Gene to Disease7763
BioCentury BCIQZFAND5
ClinGenZFAND5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7763
Chemical/Pharm GKB GenePA37587
Clinical trialZFAND5
Miscellaneous
canSAR (ICR)ZFAND5 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFAND5
EVEXZFAND5
GoPubMedZFAND5
iHOPZFAND5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:36:25 CET 2017

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