Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZFAND6 (zinc finger AN1-type containing 6)

Identity

Alias_namesZA20D3
zinc finger, A20 domain containing 3
zinc finger, AN1-type domain 6
Alias_symbol (synonym)ZFAND5B
AWP1
Other alias
HGNC (Hugo) ZFAND6
LocusID (NCBI) 54469
Atlas_Id 52595
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 80351910 and ends at 80430735 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DGKB (7p21.2) / ZFAND6 (15q25.1)USP48 (1p36.12) / ZFAND6 (15q25.1)ZFAND6 (15q25.1) / PSMB1 (6q27)
ZFAND6 (15q25.1) / ZFAND6 (15q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZFAND6   30164
Cards
Entrez_Gene (NCBI)ZFAND6  54469  zinc finger AN1-type containing 6
AliasesAWP1; ZA20D3; ZFAND5B
GeneCards (Weizmann)ZFAND6
Ensembl hg19 (Hinxton)ENSG00000086666 [Gene_View]  chr15:80351910-80430735 [Contig_View]  ZFAND6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000086666 [Gene_View]  chr15:80351910-80430735 [Contig_View]  ZFAND6 [Vega]
ICGC DataPortalENSG00000086666
TCGA cBioPortalZFAND6
AceView (NCBI)ZFAND6
Genatlas (Paris)ZFAND6
WikiGenes54469
SOURCE (Princeton)ZFAND6
Genetics Home Reference (NIH)ZFAND6
Genomic and cartography
GoldenPath hg19 (UCSC)ZFAND6  -     chr15:80351910-80430735 +  15q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZFAND6  -     15q25.1   [Description]    (hg38-Dec_2013)
EnsemblZFAND6 - 15q25.1 [CytoView hg19]  ZFAND6 - 15q25.1 [CytoView hg38]
Mapping of homologs : NCBIZFAND6 [Mapview hg19]  ZFAND6 [Mapview hg38]
OMIM610183   
Gene and transcription
Genbank (Entrez)AF061739 AF261138 AJ251095 AK055881 AK312646
RefSeq transcript (Entrez)NM_001242911 NM_001242912 NM_001242913 NM_001242914 NM_001242915 NM_001242916 NM_001242917 NM_001242918 NM_001242919 NM_019006
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)ZFAND6
Cluster EST : UnigeneHs.744030 [ NCBI ]
CGAP (NCI)Hs.744030
Alternative Splicing GalleryENSG00000086666
Gene ExpressionZFAND6 [ NCBI-GEO ]   ZFAND6 [ EBI - ARRAY_EXPRESS ]   ZFAND6 [ SEEK ]   ZFAND6 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFAND6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54469
GTEX Portal (Tissue expression)ZFAND6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6FIF0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6FIF0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6FIF0
Splice isoforms : SwissVarQ6FIF0
PhosPhoSitePlusQ6FIF0
Domaine pattern : Prosite (Expaxy)ZF_A20 (PS51036)    ZF_AN1 (PS51039)   
Domains : Interpro (EBI)Znf_A20    Znf_AN1   
Domain families : Pfam (Sanger)zf-A20 (PF01754)    zf-AN1 (PF01428)   
Domain families : Pfam (NCBI)pfam01754    pfam01428   
Domain families : Smart (EMBL)ZnF_A20 (SM00259)  ZnF_AN1 (SM00154)  
Conserved Domain (NCBI)ZFAND6
DMDM Disease mutations54469
Blocks (Seattle)ZFAND6
SuperfamilyQ6FIF0
Human Protein AtlasENSG00000086666
Peptide AtlasQ6FIF0
HPRD18314
IPIIPI00304660   IPI00004523   
Protein Interaction databases
DIP (DOE-UCLA)Q6FIF0
IntAct (EBI)Q6FIF0
FunCoupENSG00000086666
BioGRIDZFAND6
STRING (EMBL)ZFAND6
ZODIACZFAND6
Ontologies - Pathways
QuickGOQ6FIF0
Ontology : AmiGOmolecular_function  DNA binding  protein binding  cellular_component  cytoplasm  protein targeting to peroxisome  apoptotic process  zinc ion binding  polyubiquitin binding  negative regulation of apoptotic process  regulation of I-kappaB kinase/NF-kappaB signaling  cellular response to tumor necrosis factor  
Ontology : EGO-EBImolecular_function  DNA binding  protein binding  cellular_component  cytoplasm  protein targeting to peroxisome  apoptotic process  zinc ion binding  polyubiquitin binding  negative regulation of apoptotic process  regulation of I-kappaB kinase/NF-kappaB signaling  cellular response to tumor necrosis factor  
NDEx NetworkZFAND6
Atlas of Cancer Signalling NetworkZFAND6
Wikipedia pathwaysZFAND6
Orthology - Evolution
OrthoDB54469
GeneTree (enSembl)ENSG00000086666
Phylogenetic Trees/Animal Genes : TreeFamZFAND6
HOVERGENQ6FIF0
HOGENOMQ6FIF0
Homologs : HomoloGeneZFAND6
Homology/Alignments : Family Browser (UCSC)ZFAND6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFAND6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFAND6
dbVarZFAND6
ClinVarZFAND6
1000_GenomesZFAND6 
Exome Variant ServerZFAND6
ExAC (Exome Aggregation Consortium)ZFAND6 (select the gene name)
Genetic variants : HAPMAP54469
Genomic Variants (DGV)ZFAND6 [DGVbeta]
DECIPHER (Syndromes)15:80351910-80430735  ENSG00000086666
CONAN: Copy Number AnalysisZFAND6 
Mutations
ICGC Data PortalZFAND6 
TCGA Data PortalZFAND6 
Broad Tumor PortalZFAND6
OASIS PortalZFAND6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFAND6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZFAND6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZFAND6
DgiDB (Drug Gene Interaction Database)ZFAND6
DoCM (Curated mutations)ZFAND6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFAND6 (select a term)
intoGenZFAND6
Cancer3DZFAND6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610183   
Orphanet
MedgenZFAND6
Genetic Testing Registry ZFAND6
NextProtQ6FIF0 [Medical]
TSGene54469
GENETestsZFAND6
Huge Navigator ZFAND6 [HugePedia]
snp3D : Map Gene to Disease54469
BioCentury BCIQZFAND6
ClinGenZFAND6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54469
Chemical/Pharm GKB GenePA134883256
Clinical trialZFAND6
Miscellaneous
canSAR (ICR)ZFAND6 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFAND6
EVEXZFAND6
GoPubMedZFAND6
iHOPZFAND6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:34:46 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.