Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZFAS1 (ZNFX1 antisense RNA 1)

Identity

Alias (NCBI)C20orf199
HSUP1
HSUP2
NCRNA00275
ZNFX1-AS1
HGNC (Hugo) ZFAS1
HGNC Alias symbHSUP1
HSUP2
HGNC Previous nameC20orf199
 NCRNA00275
 ZNFX1-AS1
HGNC Previous namechromosome 20 open reading frame 199
 non-protein coding RNA 275
 ZNFX1 antisense RNA 1 (non-protein coding)
LocusID (NCBI) 441951
Atlas_Id 52290
Location 20q13.13  [Link to chromosome band 20q13]
Location_base_pair Starts at 49278642 and ends at 49289258 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PQLC1 (18q23) / ZFAS1 (20q13.13)ZFAS1 (20q13.13) / CALD1 (7q33)ZFAS1 (20q13.13) / DDX47 (12p13.1)
ZFAS1 (20q13.13) / MAU2 (19p13.11)ZFAS1 (20q13.13) / RPS16 (19q13.2)ZFAS1 (20q13.13) / SRSF3 (6p21.31)
ZFAS1 (20q13.13) / TF (3q22.1)ZFAS1 (20q13.13) / ZFAS1 (20q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)ZFAS1   33101
Cards
Entrez_Gene (NCBI)ZFAS1    ZNFX1 antisense RNA 1
AliasesC20orf199; HSUP1; HSUP2; NCRNA00275; 
ZNFX1-AS1
GeneCards (Weizmann)ZFAS1
Ensembl hg19 (Hinxton)ENSG00000177410 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177410 [Gene_View]  ENSG00000177410 [Sequence]  chr20:49278642-49289258 [Contig_View]  ZFAS1 [Vega]
ICGC DataPortalENSG00000177410
TCGA cBioPortalZFAS1
AceView (NCBI)ZFAS1
Genatlas (Paris)ZFAS1
SOURCE (Princeton)ZFAS1
Genetics Home Reference (NIH)ZFAS1
Genomic and cartography
GoldenPath hg38 (UCSC)ZFAS1  -     chr20:49278642-49289258 +  20q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFAS1  -     20q13.13   [Description]    (hg19-Feb_2009)
GoldenPathZFAS1 - 20q13.13 [CytoView hg19]  ZFAS1 - 20q13.13 [CytoView hg38]
ImmunoBaseENSG00000177410
genome Data Viewer NCBIZFAS1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK124175 AY339614 AY513722 AY513723 BC032480
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZFAS1
Alternative Splicing GalleryENSG00000177410
Gene ExpressionZFAS1 [ NCBI-GEO ]   ZFAS1 [ EBI - ARRAY_EXPRESS ]   ZFAS1 [ SEEK ]   ZFAS1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFAS1 [ Firebrowse - Broad ]
GenevisibleExpression of ZFAS1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441951
GTEX Portal (Tissue expression)ZFAS1
Human Protein AtlasENSG00000177410-ZFAS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZFAS1
Blocks (Seattle)ZFAS1
Human Protein Atlas [tissue]ENSG00000177410-ZFAS1 [tissue]
IPIIPI00845257   IPI00741961   
Protein Interaction databases
BioGRIDZFAS1
STRING (EMBL)ZFAS1
ZODIACZFAS1
Ontologies - Pathways
Litterature
PubMed61 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZFAS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:53:34 CET 2021

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